CircRNA Information

General Information
circRNA Basic Information
CircID chr17:7224484|7224874
Strand +
CircType exon
Host Gene ENSG00000072778.18;
Algorism CIRI2;
Sequence CAGGTGTCACAGAGCATTTTCTCATGCTGGGCCGTGGGGTGGCCCTCACTCAGGGATCTTGAGGCCCTGGCAGGAAGCAGGAGATGAAAATAAATCTGGGCCGGCTGGGATCCAGGCCCAGGCCCCCTGCGGCTCAGGCATTCCCTGCCTGCCTCCTCACCTCGAGAGAACCACCACCATGGCATAGAGGTCGATGGCCCCGTCTGCCAGCCGCTGCAGCAGAAACTGTTCATCTGTCCGGTAGGTGGGGTGGGGGTGGGGGTGGGGGCATTAGTCTCAAGGAGAGGAAAGGGAGGGGCGGAATGGTGTAGAGCTCACTTACTGACAATCCCCTTCTTGTGTTTTATCAGCTTGGCCTCCACCACAGTGGCAAACTGCTCCAGAGCCCGTA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:7224484|7224874 hsa-miR-204-5p 0 0 1
chr17:7224484|7224874 hsa-miR-204-3p 0 0 1
chr17:7224484|7224874 hsa-miR-211-5p 0 0 1
chr17:7224484|7224874 hsa-miR-211-3p 0 0 1
chr17:7224484|7224874 hsa-miR-223-5p 0 0 1
chr17:7224484|7224874 hsa-miR-223-3p 0 0 1
chr17:7224484|7224874 hsa-miR-370-5p 0 0 1
chr17:7224484|7224874 hsa-miR-370-3p 0 0 1
chr17:7224484|7224874 hsa-miR-539-5p 0 0 1
chr17:7224484|7224874 hsa-miR-539-3p 0 0 1
chr17:7224484|7224874 hsa-miR-650 0 0 1
chr17:7224484|7224874 hsa-miR-661 0 1 1
chr17:7224484|7224874 hsa-miR-760 1 1 1
chr17:7224484|7224874 hsa-miR-940 0 0 1
chr17:7224484|7224874 hsa-miR-1238-5p 0 0 1
chr17:7224484|7224874 hsa-miR-1238-3p 0 0 1
chr17:7224484|7224874 hsa-miR-1827 0 0 1
chr17:7224484|7224874 hsa-miR-1184 0 1 1
chr17:7224484|7224874 hsa-miR-1224-3p 0 1 1
chr17:7224484|7224874 hsa-miR-483-5p 0 0 1
chr17:7224484|7224874 hsa-miR-876-3p 0 0 1
chr17:7224484|7224874 hsa-miR-516a-5p 0 1 1
chr17:7224484|7224874 hsa-miR-338-3p 0 1 1
chr17:7224484|7224874 hsa-miR-1207-5p 0 1 1
chr17:7224484|7224874 hsa-miR-125a-5p 0 0 1
chr17:7224484|7224874 hsa-miR-542-3p 0 0 1
chr17:7224484|7224874 hsa-miR-516a-3p 0 1 1
chr17:7224484|7224874 hsa-miR-323-5p 0 0 1
chr17:7224484|7224874 hsa-miR-125b 0 0 1
chr17:7224484|7224874 hsa-miR-516b 0 0 1
chr17:7224484|7224874 hsa-miR-544 0 0 1
chr17:7224484|7224874 hsa-miR-1254 0 0 1
chr17:7224484|7224874 hsa-miR-1201 0 0 1
chr17:7224484|7224874 hsa-miR-219-5p 0 0 1
chr17:7224484|7224874 hsa-miR-365 0 0 1
chr17:7224484|7224874 hsa-miR-762 1 1 0
chr17:7224484|7224874 hsa-miR-1976 0 1 0
chr17:7224484|7224874 hsa-miR-718 0 1 0
chr17:7224484|7224874 hsa-miR-2861 0 1 0
chr17:7224484|7224874 hsa-miR-3154 0 1 0
chr17:7224484|7224874 hsa-miR-3612 0 1 0
chr17:7224484|7224874 hsa-miR-3672 0 1 0
chr17:7224484|7224874 hsa-miR-3918 0 1 0
chr17:7224484|7224874 hsa-miR-4450 0 1 0
chr17:7224484|7224874 hsa-miR-3135b 1 0 0
chr17:7224484|7224874 hsa-miR-4466 1 0 0
chr17:7224484|7224874 hsa-miR-4488 1 0 0
chr17:7224484|7224874 hsa-miR-4512 1 1 0
chr17:7224484|7224874 hsa-miR-3960 1 1 0
chr17:7224484|7224874 hsa-miR-3975 0 1 0
chr17:7224484|7224874 hsa-miR-4656 1 0 0
chr17:7224484|7224874 hsa-miR-4689 1 1 0
chr17:7224484|7224874 hsa-miR-4692 0 1 0
chr17:7224484|7224874 hsa-miR-4710 0 1 0
chr17:7224484|7224874 hsa-miR-4780 0 1 0
chr17:7224484|7224874 hsa-miR-5090 1 0 0
chr17:7224484|7224874 hsa-miR-5683 0 1 0
chr17:7224484|7224874 hsa-miR-6069 1 0 0
chr17:7224484|7224874 hsa-miR-6071 0 1 0
chr17:7224484|7224874 hsa-miR-6075 0 1 0
chr17:7224484|7224874 hsa-miR-6081 1 0 0
chr17:7224484|7224874 hsa-miR-6088 1 0 0
chr17:7224484|7224874 hsa-miR-7977 0 1 0
chr17:7224484|7224874 hsa-miR-12121 1 0 0
chr17:7224484|7224874 hsa-miR-181a-3p 0 1 0
chr17:7224484|7224874 hsa-miR-6747-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6765-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6892-3p 1 0 0
chr17:7224484|7224874 hsa-miR-1227-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6089 1 0 0
chr17:7224484|7224874 hsa-miR-6880-5p 1 1 0
chr17:7224484|7224874 hsa-miR-7847-3p 1 1 0
chr17:7224484|7224874 hsa-miR-4695-5p 1 1 0
chr17:7224484|7224874 hsa-miR-4722-5p 1 0 0
chr17:7224484|7224874 hsa-miR-7154-3p 1 0 0
chr17:7224484|7224874 hsa-miR-4655-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6716-5p 1 0 0
chr17:7224484|7224874 hsa-miR-877-3p 1 0 0
chr17:7224484|7224874 hsa-miR-4697-3p 1 0 0
chr17:7224484|7224874 hsa-miR-6732-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6805-5p 0 1 0
chr17:7224484|7224874 hsa-miR-6798-5p 0 1 0
chr17:7224484|7224874 hsa-miR-5006-5p 0 1 0
chr17:7224484|7224874 hsa-miR-6786-5p 1 0 0
chr17:7224484|7224874 hsa-miR-939-3p 1 1 0
chr17:7224484|7224874 hsa-miR-1226-5p 1 1 0
chr17:7224484|7224874 hsa-miR-4763-5p 1 0 0
chr17:7224484|7224874 hsa-miR-7108-3p 0 1 0
chr17:7224484|7224874 hsa-miR-6784-5p 1 0 0
chr17:7224484|7224874 hsa-miR-3667-3p 0 1 0
chr17:7224484|7224874 hsa-miR-6749-5p 1 0 0
chr17:7224484|7224874 hsa-miR-7854-3p 0 1 0
chr17:7224484|7224874 hsa-miR-6501-5p 1 0 0
chr17:7224484|7224874 hsa-miR-7111-3p 1 0 0
chr17:7224484|7224874 hsa-miR-6769a-3p 1 1 0
chr17:7224484|7224874 hsa-miR-4758-3p 0 1 0
chr17:7224484|7224874 hsa-miR-6887-3p 0 1 0
chr17:7224484|7224874 hsa-miR-597-3p 0 1 0
chr17:7224484|7224874 hsa-miR-6508-3p 0 1 0
chr17:7224484|7224874 hsa-miR-6865-3p 1 1 0
chr17:7224484|7224874 hsa-miR-6826-3p 0 1 0
chr17:7224484|7224874 hsa-miR-4749-3p 1 0 0
chr17:7224484|7224874 hsa-miR-6859-3p 1 0 0
chr17:7224484|7224874 hsa-miR-335-3p 0 1 0
chr17:7224484|7224874 hsa-miR-3124-3p 0 1 0
chr17:7224484|7224874 hsa-miR-3670 1 0 0
chr17:7224484|7224874 hsa-miR-670-5p 0 1 0
chr17:7224484|7224874 hsa-miR-1249-3p 1 1 0
chr17:7224484|7224874 hsa-miR-6800-3p 1 0 0
chr17:7224484|7224874 hsa-miR-3162-3p 0 1 0
chr17:7224484|7224874 hsa-miR-10400-5p 1 0 0
chr17:7224484|7224874 hsa-miR-4763-3p 0 1 0
chr17:7224484|7224874 hsa-miR-6787-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6893-5p 0 1 0
chr17:7224484|7224874 hsa-miR-6775-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6752-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6756-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6803-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6819-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6842-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6851-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6722-3p 0 1 0
chr17:7224484|7224874 hsa-miR-6751-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6808-5p 0 1 0
chr17:7224484|7224874 hsa-miR-4685-3p 0 1 0
chr17:7224484|7224874 hsa-miR-1237-5p 1 0 0
chr17:7224484|7224874 hsa-miR-1909-3p 1 1 0
chr17:7224484|7224874 hsa-miR-328-5p 1 0 0
chr17:7224484|7224874 hsa-miR-4685-5p 1 1 0
chr17:7224484|7224874 hsa-miR-6848-5p 1 0 0
chr17:7224484|7224874 hsa-miR-6858-5p 1 1 0
chr17:7224484|7224874 hsa-miR-6885-5p 1 0 0
chr17:7224484|7224874 hsa-miR-3085-5p 1 0 0
chr17:7224484|7224874 hsa-miR-1199-5p 0 1 0
chr17:7224484|7224874 hsa-miR-3116 0 1 0
chr17:7224484|7224874 hsa-miR-6762-5p 1 1 0
chr17:7224484|7224874 hsa-miR-4722-3p 1 1 0
chr17:7224484|7224874 hsa-miR-6727-3p 0 1 0
chr17:7224484|7224874 hsa-miR-6784-3p 0 1 0
chr17:7224484|7224874 hsa-miR-6805-3p 1 0 0
chr17:7224484|7224874 hsa-miR-6837-5p 0 1 0
chr17:7224484|7224874 hsa-miR-4723-3p 1 0 0
chr17:7224484|7224874 hsa-miR-323b-5p 0 1 0
chr17:7224484|7224874 hsa-miR-6843-3p 1 0 0
chr17:7224484|7224874 hsa-miR-410-5p 0 1 0
chr17:7224484|7224874 hsa-miR-6864-3p 0 1 0
chr17:7224484|7224874 hsa-miR-365a-3p 0 1 0
chr17:7224484|7224874 hsa-miR-365b-3p 0 1 0
chr17:7224484|7224874 hsa-miR-516b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:7224484|7224874
ORF Type ORF1
Protein Length 88
Nucleotide Length 264
Protein Sequence MRLRHSLPASSPRENHHHGIEVDGPVCQPLQQKLFICPVGGVGVGVGALVSRRGKGGAEWCRAHLLTIPFLCFISLASTTVANCSRAR
Nucleotide Sequence CTGCGGCTCAGGCATTCCCTGCCTGCCTCCTCACCTCGAGAGAACCACCACCATGGCATAGAGGTCGATGGCCCCGTCTGCCAGCCGCTGCAGCAGAAACTGTTCATCTGTCCGGTAGGTGGGGTGGGGGTGGGGGTGGGGGCATTAGTCTCAAGGAGAGGAAAGGGAGGGGCGGAATGGTGTAGAGCTCACTTACTGACAATCCCCTTCTTGTGTTTTATCAGCTTGGCCTCCACCACAGTGGCAAACTGCTCCAGAGCCCGT
CircID chr17:7224484|7224874
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MRPWQEAGDENKSGPAGIQAQAPCGSGIPCLPPHLERTTTMA
Nucleotide Sequence TTGAGGCCCTGGCAGGAAGCAGGAGATGAAAATAAATCTGGGCCGGCTGGGATCCAGGCCCAGGCCCCCTGCGGCTCAGGCATTCCCTGCCTGCCTCCTCACCTCGAGAGAACCACCACCATGGCATAG
CircID chr17:7224484|7224874
ORF Type ORF3
Protein Length 75
Nucleotide Length 228
Protein Sequence MKINLGRLGSRPRPPAAQAFPACLLTSREPPPWHRGRWPRLPAAAAETVHLSGRWGGGGGGGISLKERKGRGGMV
Nucleotide Sequence ATGAAAATAAATCTGGGCCGGCTGGGATCCAGGCCCAGGCCCCCTGCGGCTCAGGCATTCCCTGCCTGCCTCCTCACCTCGAGAGAACCACCACCATGGCATAGAGGTCGATGGCCCCGTCTGCCAGCCGCTGCAGCAGAAACTGTTCATCTGTCCGGTAGGTGGGGTGGGGGTGGGGGTGGGGGCATTAGTCTCAAGGAGAGGAAAGGGAGGGGCGGAATGGTGTAG
CircID chr17:7224484|7224874
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MSVSELYTIPPLPFLSLRLMPPPPPPPHLPDR
Nucleotide Sequence TTGTCAGTAAGTGAGCTCTACACCATTCCGCCCCTCCCTTTCCTCTCCTTGAGACTAATGCCCCCACCCCCACCCCCACCCCACCTACCGGACAGATGA
CircID chr17:7224484|7224874
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MPEPQGAWAWIPAGPDLFSSPASCQGLKIPE
Nucleotide Sequence ATGCCTGAGCCGCAGGGGGCCTGGGCCTGGATCCCAGCCGGCCCAGATTTATTTTCATCTCCTGCTTCCTGCCAGGGCCTCAAGATCCCTGAGTGA
CircID chr17:7224484|7224874
ORF Type ORF6
Protein Length 77
Nucleotide Length 231
Protein Sequence MNSFCCSGWQTGPSTSMPWWWFSRGEEAGRECLSRRGPGPGSQPAQIYFHLLLPARASRSLSEGHPTAQHEKMLCDT
Nucleotide Sequence ATGAACAGTTTCTGCTGCAGCGGCTGGCAGACGGGGCCATCGACCTCTATGCCATGGTGGTGGTTCTCTCGAGGTGAGGAGGCAGGCAGGGAATGCCTGAGCCGCAGGGGGCCTGGGCCTGGATCCCAGCCGGCCCAGATTTATTTTCATCTCCTGCTTCCTGCCAGGGCCTCAAGATCCCTGAGTGAGGGCCACCCCACGGCCCAGCATGAGAAAATGCTCTGTGACACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab