CircRNA Information

General Information
circRNA Basic Information
CircID chr17:7229006|7229218
Strand +
CircType exon
Host Gene ENSG00000004975.10;
Algorism CIRI2;
Sequence GGAGGCATCTACATTGGCTCCATCATGAAGGGTGGGGCTGTGGCGGCCGACGGGCGCATTGAGCCAGGGGACATGCTTTTGCAGGTGTGCTGGGGTAGGGCCACTGAGCTGCCCTGCACGGGGGCCCTCAGCCTCTCCCACCGTGTCTCTGACCCACTTGCCGTCGCTTCCAGGTGAATGACATGAACTTTGAGAACATGAGCAACGATGACG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:7229006|7229218 hsa-miR-205-5p 0 0 1
chr17:7229006|7229218 hsa-miR-205-3p 0 0 1
chr17:7229006|7229218 hsa-miR-149-5p 0 0 1
chr17:7229006|7229218 hsa-miR-149-3p 0 0 1
chr17:7229006|7229218 hsa-miR-328-5p 0 0 1
chr17:7229006|7229218 hsa-miR-328-3p 0 0 1
chr17:7229006|7229218 hsa-miR-433-5p 0 0 1
chr17:7229006|7229218 hsa-miR-433-3p 0 0 1
chr17:7229006|7229218 hsa-miR-520g-5p 0 0 1
chr17:7229006|7229218 hsa-miR-520g-3p 0 0 1
chr17:7229006|7229218 hsa-miR-520h 0 0 1
chr17:7229006|7229218 hsa-miR-616-5p 0 0 1
chr17:7229006|7229218 hsa-miR-616-3p 0 0 1
chr17:7229006|7229218 hsa-miR-619-5p 0 0 1
chr17:7229006|7229218 hsa-miR-619-3p 0 0 1
chr17:7229006|7229218 hsa-miR-1178-5p 0 0 1
chr17:7229006|7229218 hsa-miR-1178-3p 0 0 1
chr17:7229006|7229218 hsa-miR-1228-5p 0 0 1
chr17:7229006|7229218 hsa-miR-1228-3p 0 0 1
chr17:7229006|7229218 hsa-miR-663b 0 0 1
chr17:7229006|7229218 hsa-miR-1206 0 0 1
chr17:7229006|7229218 hsa-miR-1291 0 0 1
chr17:7229006|7229218 hsa-miR-513c-5p 0 0 1
chr17:7229006|7229218 hsa-miR-513c-3p 0 0 1
chr17:7229006|7229218 hsa-miR-671-5p 1 0 1
chr17:7229006|7229218 hsa-miR-296-5p 0 0 1
chr17:7229006|7229218 hsa-miR-485-5p 0 0 1
chr17:7229006|7229218 hsa-miR-331-3p 0 0 1
chr17:7229006|7229218 hsa-miR-371-5p 0 0 1
chr17:7229006|7229218 hsa-miR-24 0 0 1
chr17:7229006|7229218 hsa-miR-3196 1 0 0
chr17:7229006|7229218 hsa-miR-4462 1 0 0
chr17:7229006|7229218 hsa-miR-3960 1 0 0
chr17:7229006|7229218 hsa-miR-4657 1 0 0
chr17:7229006|7229218 hsa-miR-6090 1 0 0
chr17:7229006|7229218 hsa-miR-9901 1 0 0
chr17:7229006|7229218 hsa-miR-4665-3p 1 0 0
chr17:7229006|7229218 hsa-miR-4655-5p 1 0 0
chr17:7229006|7229218 hsa-miR-2467-3p 1 0 0
chr17:7229006|7229218 hsa-miR-1908-3p 1 0 0
chr17:7229006|7229218 hsa-miR-7112-5p 1 0 0
chr17:7229006|7229218 hsa-miR-7158-5p 1 0 0
chr17:7229006|7229218 hsa-miR-4787-3p 1 0 0
chr17:7229006|7229218 hsa-miR-4763-3p 1 0 0
chr17:7229006|7229218 hsa-miR-1343-5p 1 0 0
chr17:7229006|7229218 hsa-miR-6756-5p 1 0 0
chr17:7229006|7229218 hsa-miR-6879-5p 1 0 0
chr17:7229006|7229218 hsa-miR-4745-5p 1 0 0
chr17:7229006|7229218 hsa-miR-3085-3p 1 0 0
chr17:7229006|7229218 hsa-miR-4701-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:7229006|7229218
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MKGGAVAADGRIEPGDMLLQVCWGRATELPCTGALSLSHRVSDPLAVASR
Nucleotide Sequence ATGAAGGGTGGGGCTGTGGCGGCCGACGGGCGCATTGAGCCAGGGGACATGCTTTTGCAGGTGTGCTGGGGTAGGGCCACTGAGCTGCCCTGCACGGGGGCCCTCAGCCTCTCCCACCGTGTCTCTGACCCACTTGCCGTCGCTTCCAGGTGA
CircID chr17:7229006|7229218
ORF Type ORF2
Protein Length 47
Nucleotide Length 144
Protein Sequence MWRPTGALSQGTCFCRCAGVGPLSCPARGPSASPTVSLTHLPSLPGE
Nucleotide Sequence CTGTGGCGGCCGACGGGCGCATTGAGCCAGGGGACATGCTTTTGCAGGTGTGCTGGGGTAGGGCCACTGAGCTGCCCTGCACGGGGGCCCTCAGCCTCTCCCACCGTGTCTCTGACCCACTTGCCGTCGCTTCCAGGTGAATGA
CircID chr17:7229006|7229218
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MQKHVPWLNAPVGRHSPTLHDGANVDAS
Nucleotide Sequence CTGCAAAAGCATGTCCCCTGGCTCAATGCGCCCGTCGGCCGCCACAGCCCCACCCTTCATGATGGAGCCAATGTAGATGCCTCC
CircID chr17:7229006|7229218
ORF Type ORF4
Protein Length 54
Nucleotide Length 165
Protein Sequence MEATASGSETRWERLRAPVQGSSVALPQHTCKSMSPGSMRPSAATAPPFMMEPM
Nucleotide Sequence CTGGAAGCGACGGCAAGTGGGTCAGAGACACGGTGGGAGAGGCTGAGGGCCCCCGTGCAGGGCAGCTCAGTGGCCCTACCCCAGCACACCTGCAAAAGCATGTCCCCTGGCTCAATGCGCCCGTCGGCCGCCACAGCCCCACCCTTCATGATGGAGCCAATGTAG
CircID chr17:7229006|7229218
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence MLMFSKFMSFTWKRRQVGQRHGGRG
Nucleotide Sequence TTGCTCATGTTCTCAAAGTTCATGTCATTCACCTGGAAGCGACGGCAAGTGGGTCAGAGACACGGTGGGAGAGGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab