CircRNA Information

General Information
circRNA Basic Information
CircID chr17:72648922|72649228
Strand -
CircType exon
Host Gene ENSG00000133195.10;
Algorism CIRI2;
Sequence CCCGGCCAGGGGCTCCACCATGCCGCTCAGCTGCCCATACCTAAGGAGAGAACAGAGACATTTACCACCGCAGGGGGAGGCAAGCAGACACTCCACGTGCCCAGACTGTTGGCTCAACCCTAGCACATGGATGCATGCCATTCTACGTCATATCTGAGCATGGCAGTGCAAAAGCACATCACTGTTTTGTTGAAAGAAGCCCACATGGAGGATGCTGTGACATGGCCTTGCCCTTGGGCAGCACTCACCAGAAAGCTCTCCAGGTGGAGAAGCCTGCCCCTCGCAAGGGAAGGCTGACAGCCAGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:72648922|72649228 hsa-miR-204-5p 0 0 1
chr17:72648922|72649228 hsa-miR-204-3p 0 0 1
chr17:72648922|72649228 hsa-miR-211-5p 0 0 1
chr17:72648922|72649228 hsa-miR-211-3p 0 0 1
chr17:72648922|72649228 hsa-miR-212-5p 0 0 1
chr17:72648922|72649228 hsa-miR-212-3p 0 0 1
chr17:72648922|72649228 hsa-miR-122-5p 0 0 1
chr17:72648922|72649228 hsa-miR-122-3p 0 0 1
chr17:72648922|72649228 hsa-miR-132-5p 0 0 1
chr17:72648922|72649228 hsa-miR-132-3p 0 0 1
chr17:72648922|72649228 hsa-miR-185-5p 0 0 1
chr17:72648922|72649228 hsa-miR-185-3p 0 0 1
chr17:72648922|72649228 hsa-miR-346 0 0 1
chr17:72648922|72649228 hsa-miR-507 0 0 1
chr17:72648922|72649228 hsa-miR-557 0 0 1
chr17:72648922|72649228 hsa-miR-593-5p 0 0 1
chr17:72648922|72649228 hsa-miR-593-3p 0 0 1
chr17:72648922|72649228 hsa-miR-612 1 0 1
chr17:72648922|72649228 hsa-miR-619-5p 0 0 1
chr17:72648922|72649228 hsa-miR-619-3p 0 0 1
chr17:72648922|72649228 hsa-miR-622 0 0 1
chr17:72648922|72649228 hsa-miR-623 1 0 1
chr17:72648922|72649228 hsa-miR-632 0 0 1
chr17:72648922|72649228 hsa-miR-636 0 0 1
chr17:72648922|72649228 hsa-miR-421 0 0 1
chr17:72648922|72649228 hsa-miR-1305 0 0 1
chr17:72648922|72649228 hsa-miR-1277-5p 0 0 1
chr17:72648922|72649228 hsa-miR-1277-3p 0 0 1
chr17:72648922|72649228 hsa-miR-1225-3p 0 0 1
chr17:72648922|72649228 hsa-miR-512-3p 0 0 1
chr17:72648922|72649228 hsa-miR-486-3p 0 0 1
chr17:72648922|72649228 hsa-miR-296-3p 0 1 1
chr17:72648922|72649228 hsa-miR-299-3p 0 0 1
chr17:72648922|72649228 hsa-miR-324-5p 0 0 1
chr17:72648922|72649228 hsa-miR-423-5p 0 1 1
chr17:72648922|72649228 hsa-miR-331-5p 0 0 1
chr17:72648922|72649228 hsa-miR-331-3p 0 0 1
chr17:72648922|72649228 hsa-miR-515-5p 0 0 1
chr17:72648922|72649228 hsa-miR-450b-5p 0 0 1
chr17:72648922|72649228 hsa-miR-1285 0 0 1
chr17:72648922|72649228 hsa-miR-218 0 0 1
chr17:72648922|72649228 hsa-miR-608 1 0 0
chr17:72648922|72649228 hsa-miR-762 1 0 0
chr17:72648922|72649228 hsa-miR-3138 1 0 0
chr17:72648922|72649228 hsa-miR-3196 1 0 0
chr17:72648922|72649228 hsa-miR-4322 1 0 0
chr17:72648922|72649228 hsa-miR-4274 1 0 0
chr17:72648922|72649228 hsa-miR-3659 1 0 0
chr17:72648922|72649228 hsa-miR-1268b 1 0 0
chr17:72648922|72649228 hsa-miR-4479 1 0 0
chr17:72648922|72649228 hsa-miR-4642 1 0 0
chr17:72648922|72649228 hsa-miR-4651 1 0 0
chr17:72648922|72649228 hsa-miR-4656 1 0 0
chr17:72648922|72649228 hsa-miR-4688 1 0 0
chr17:72648922|72649228 hsa-miR-4710 1 0 0
chr17:72648922|72649228 hsa-miR-4734 1 0 0
chr17:72648922|72649228 hsa-miR-4741 1 0 0
chr17:72648922|72649228 hsa-miR-6860 1 1 0
chr17:72648922|72649228 hsa-miR-8074 1 1 0
chr17:72648922|72649228 hsa-miR-8089 1 0 0
chr17:72648922|72649228 hsa-miR-103a-2-5p 1 0 0
chr17:72648922|72649228 hsa-miR-15a-3p 0 1 0
chr17:72648922|72649228 hsa-miR-6836-3p 0 1 0
chr17:72648922|72649228 hsa-miR-6861-5p 1 0 0
chr17:72648922|72649228 hsa-miR-4687-3p 1 0 0
chr17:72648922|72649228 hsa-miR-3934-5p 1 0 0
chr17:72648922|72649228 hsa-miR-6807-5p 0 1 0
chr17:72648922|72649228 hsa-miR-6721-5p 0 1 0
chr17:72648922|72649228 hsa-miR-197-5p 1 0 0
chr17:72648922|72649228 hsa-miR-6829-5p 1 0 0
chr17:72648922|72649228 hsa-miR-6821-5p 1 0 0
chr17:72648922|72649228 hsa-miR-7855-5p 0 1 0
chr17:72648922|72649228 hsa-miR-3934-3p 1 0 0
chr17:72648922|72649228 hsa-miR-6786-5p 1 0 0
chr17:72648922|72649228 hsa-miR-1226-5p 1 0 0
chr17:72648922|72649228 hsa-miR-1229-5p 1 0 0
chr17:72648922|72649228 hsa-miR-885-3p 1 0 0
chr17:72648922|72649228 hsa-miR-1228-5p 1 0 0
chr17:72648922|72649228 hsa-miR-3614-5p 1 0 0
chr17:72648922|72649228 hsa-miR-6818-3p 1 1 0
chr17:72648922|72649228 hsa-miR-6809-3p 1 0 0
chr17:72648922|72649228 hsa-miR-6830-3p 1 0 0
chr17:72648922|72649228 hsa-miR-194-5p 1 1 0
chr17:72648922|72649228 hsa-miR-4707-5p 1 0 0
chr17:72648922|72649228 hsa-miR-6814-5p 0 1 0
chr17:72648922|72649228 hsa-miR-6509-5p 0 1 0
chr17:72648922|72649228 hsa-miR-6890-3p 0 1 0
chr17:72648922|72649228 hsa-miR-10400-5p 1 0 0
chr17:72648922|72649228 hsa-miR-1343-5p 1 0 0
chr17:72648922|72649228 hsa-miR-6743-5p 1 1 0
chr17:72648922|72649228 hsa-miR-6756-5p 1 0 0
chr17:72648922|72649228 hsa-miR-6819-5p 1 0 0
chr17:72648922|72649228 hsa-miR-7107-5p 1 0 0
chr17:72648922|72649228 hsa-miR-10401-5p 1 0 0
chr17:72648922|72649228 hsa-miR-6774-5p 1 0 0
chr17:72648922|72649228 hsa-miR-6836-5p 0 1 0
chr17:72648922|72649228 hsa-miR-328-5p 1 0 0
chr17:72648922|72649228 hsa-miR-4632-5p 1 0 0
chr17:72648922|72649228 hsa-miR-4649-5p 1 0 0
chr17:72648922|72649228 hsa-miR-6848-5p 1 0 0
chr17:72648922|72649228 hsa-miR-3187-5p 1 0 0
chr17:72648922|72649228 hsa-miR-939-5p 1 0 0
chr17:72648922|72649228 hsa-miR-4758-5p 1 0 0
chr17:72648922|72649228 hsa-miR-10398-3p 1 0 0
chr17:72648922|72649228 hsa-miR-4768-5p 1 0 0
chr17:72648922|72649228 hsa-miR-103a-1-5p 0 1 0
chr17:72648922|72649228 hsa-miR-6764-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:72648922|72649228
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MPIPKERTETFTTAGGGKQTLHVPRLLAQP
Nucleotide Sequence CTGCCCATACCTAAGGAGAGAACAGAGACATTTACCACCGCAGGGGGAGGCAAGCAGACACTCCACGTGCCCAGACTGTTGGCTCAACCCTAG
CircID chr17:72648922|72649228
ORF Type ORF2
Protein Length 56
Nucleotide Length 171
Protein Sequence MDACHSTSYLSMAVQKHITVLLKEAHMEDAVTWPCPWAALTRKLSRWRSLPLAREG
Nucleotide Sequence ATGGATGCATGCCATTCTACGTCATATCTGAGCATGGCAGTGCAAAAGCACATCACTGTTTTGTTGAAAGAAGCCCACATGGAGGATGCTGTGACATGGCCTTGCCCTTGGGCAGCACTCACCAGAAAGCTCTCCAGGTGGAGAAGCCTGCCCCTCGCAAGGGAAGGCTGA
CircID chr17:72648922|72649228
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MPLSCPYLRREQRHLPPQGEASRHSTCPDCWLNPSTWMHAILRHI
Nucleotide Sequence ATGCCGCTCAGCTGCCCATACCTAAGGAGAGAACAGAGACATTTACCACCGCAGGGGGAGGCAAGCAGACACTCCACGTGCCCAGACTGTTGGCTCAACCCTAGCACATGGATGCATGCCATTCTACGTCATATCTGA
CircID chr17:72648922|72649228
ORF Type ORF4
Protein Length 57
Nucleotide Length 171
Protein Sequence MPFYVISEHGSAKAHHCFVERSPHGGCCDMALPLGSTHQKALQVEKPAPRKGRLTAR
Nucleotide Sequence ATGCCATTCTACGTCATATCTGAGCATGGCAGTGCAAAAGCACATCACTGTTTTGTTGAAAGAAGCCCACATGGAGGATGCTGTGACATGGCCTTGCCCTTGGGCAGCACTCACCAGAAAGCTCTCCAGGTGGAGAAGCCTGCCCCTCGCAAGGGAAGGCTGACAGCCAGG
CircID chr17:72648922|72649228
ORF Type ORF5
Protein Length 50
Nucleotide Length 153
Protein Sequence MSAFPCEGQASPPGELSGECCPRARPCHSILHVGFFQQNSDVLLHCHAQI
Nucleotide Sequence CTGTCAGCCTTCCCTTGCGAGGGGCAGGCTTCTCCACCTGGAGAGCTTTCTGGTGAGTGCTGCCCAAGGGCAAGGCCATGTCACAGCATCCTCCATGTGGGCTTCTTTCAACAAAACAGTGATGTGCTTTTGCACTGCCATGCTCAGATATGA
CircID chr17:72648922|72649228
ORF Type ORF6
Protein Length 47
Nucleotide Length 141
Protein Sequence MACIHVLGLSQQSGHVECLLASPCGGKCLCSLLRYGQLSGMVEPLAG
Nucleotide Sequence ATGGCATGCATCCATGTGCTAGGGTTGAGCCAACAGTCTGGGCACGTGGAGTGTCTGCTTGCCTCCCCCTGCGGTGGTAAATGTCTCTGTTCTCTCCTTAGGTATGGGCAGCTGAGCGGCATGGTGGAGCCCCTGGCCGGG
CircID chr17:72648922|72649228
ORF Type ORF7
Protein Length 47
Nucleotide Length 144
Protein Sequence MESFLVSAAQGQGHVTASSMWASFNKTVMCFCTAMLRYDVEWHASMC
Nucleotide Sequence CTGGAGAGCTTTCTGGTGAGTGCTGCCCAAGGGCAAGGCCATGTCACAGCATCCTCCATGTGGGCTTCTTTCAACAAAACAGTGATGTGCTTTTGCACTGCCATGCTCAGATATGACGTAGAATGGCATGCATCCATGTGCTAG
CircID chr17:72648922|72649228
ORF Type ORF8
Protein Length 25
Nucleotide Length 78
Protein Sequence MGTWSVCLPPPAVVNVSVLSLGMGS
Nucleotide Sequence CTGGGCACGTGGAGTGTCTGCTTGCCTCCCCCTGCGGTGGTAAATGTCTCTGTTCTCTCCTTAGGTATGGGCAGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab