CircRNA Information

General Information
circRNA Basic Information
CircID chr17:73285310|73285409
Strand +
CircType exon
Host Gene ENSG00000179604.9;
Algorism CIRI2;
Sequence CGGGAGCTCTTGGCTGCATCTTCTCCCTGCCCCCACCCCACTATGACCTTTGACCCTACGGCGCAGGGGCAGCCAGGACCCTTGATTCAGACCATGGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:73285310|73285409 hsa-miR-335-5p 0 0 1
chr17:73285310|73285409 hsa-miR-335-3p 0 0 1
chr17:73285310|73285409 hsa-miR-604 0 0 1
chr17:73285310|73285409 hsa-miR-608 1 1 1
chr17:73285310|73285409 hsa-miR-647 0 0 1
chr17:73285310|73285409 hsa-miR-1182 1 0 1
chr17:73285310|73285409 hsa-miR-1253 0 1 1
chr17:73285310|73285409 hsa-miR-486-3p 0 0 1
chr17:73285310|73285409 hsa-miR-1207-5p 0 1 1
chr17:73285310|73285409 hsa-miR-324-3p 0 0 1
chr17:73285310|73285409 hsa-miR-342-5p 0 0 1
chr17:73285310|73285409 hsa-miR-762 1 0 0
chr17:73285310|73285409 hsa-miR-1183 1 0 0
chr17:73285310|73285409 hsa-miR-1913 0 1 0
chr17:73285310|73285409 hsa-miR-4259 1 0 0
chr17:73285310|73285409 hsa-miR-4441 0 1 0
chr17:73285310|73285409 hsa-miR-3974 0 1 0
chr17:73285310|73285409 hsa-miR-4651 1 1 0
chr17:73285310|73285409 hsa-miR-4654 1 0 0
chr17:73285310|73285409 hsa-miR-4739 1 1 0
chr17:73285310|73285409 hsa-miR-5572 1 0 0
chr17:73285310|73285409 hsa-miR-5787 1 0 0
chr17:73285310|73285409 hsa-miR-6745 1 0 0
chr17:73285310|73285409 hsa-miR-7155-5p 1 0 0
chr17:73285310|73285409 hsa-miR-1227-5p 1 0 0
chr17:73285310|73285409 hsa-miR-6727-5p 1 0 0
chr17:73285310|73285409 hsa-miR-6721-5p 0 1 0
chr17:73285310|73285409 hsa-miR-6742-5p 1 1 0
chr17:73285310|73285409 hsa-miR-3151-5p 1 0 0
chr17:73285310|73285409 hsa-miR-6793-5p 1 0 0
chr17:73285310|73285409 hsa-miR-6796-5p 1 0 0
chr17:73285310|73285409 hsa-miR-3190-3p 1 0 0
chr17:73285310|73285409 hsa-miR-6760-5p 0 1 0
chr17:73285310|73285409 hsa-miR-6782-5p 1 1 0
chr17:73285310|73285409 hsa-miR-6821-5p 1 0 0
chr17:73285310|73285409 hsa-miR-6810-5p 1 0 0
chr17:73285310|73285409 hsa-miR-6786-5p 1 0 0
chr17:73285310|73285409 hsa-miR-3648 1 0 0
chr17:73285310|73285409 hsa-miR-6878-5p 0 1 0
chr17:73285310|73285409 hsa-miR-6877-5p 1 0 0
chr17:73285310|73285409 hsa-miR-135b-3p 0 1 0
chr17:73285310|73285409 hsa-miR-4727-3p 0 1 0
chr17:73285310|73285409 hsa-miR-6801-5p 1 0 0
chr17:73285310|73285409 hsa-miR-4763-3p 0 1 0
chr17:73285310|73285409 hsa-miR-6812-5p 1 1 0
chr17:73285310|73285409 hsa-miR-6816-5p 1 0 0
chr17:73285310|73285409 hsa-miR-6775-5p 0 1 0
chr17:73285310|73285409 hsa-miR-6737-5p 1 0 0
chr17:73285310|73285409 hsa-miR-6756-5p 1 1 0
chr17:73285310|73285409 hsa-miR-6819-5p 1 1 0
chr17:73285310|73285409 hsa-miR-6842-5p 1 0 0
chr17:73285310|73285409 hsa-miR-7110-5p 0 1 0
chr17:73285310|73285409 hsa-miR-1249-5p 1 1 0
chr17:73285310|73285409 hsa-miR-328-5p 0 1 0
chr17:73285310|73285409 hsa-miR-4726-5p 1 0 0
chr17:73285310|73285409 hsa-miR-4436b-3p 0 1 0
chr17:73285310|73285409 hsa-miR-1914-3p 1 0 0
chr17:73285310|73285409 hsa-miR-6855-5p 1 0 0
chr17:73285310|73285409 hsa-miR-6766-5p 0 1 0
chr17:73285310|73285409 hsa-miR-6791-5p 1 0 0
chr17:73285310|73285409 hsa-miR-6810-3p 0 1 0
chr17:73285310|73285409 hsa-miR-3085-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:73285310|73285409
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MAASSPCPHPTMTFDPTAQGQPGPLIQTMD
Nucleotide Sequence TTGGCTGCATCTTCTCCCTGCCCCCACCCCACTATGACCTTTGACCCTACGGCGCAGGGGCAGCCAGGACCCTTGATTCAGACCATGGAC
CircID chr17:73285310|73285409
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MNQGSWLPLRRRVKGHSGVGAGRRCSQELP
Nucleotide Sequence CTGAATCAAGGGTCCTGGCTGCCCCTGCGCCGTAGGGTCAAAGGTCATAGTGGGGTGGGGGCAGGGAGAAGATGCAGCCAAGAGCTCCCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab