CircRNA Information

General Information
circRNA Basic Information
CircID chr17:7463472|7463600
Strand +
CircType exon
Host Gene ENSG00000174282.10;
Algorism CIRI2;
Sequence CTGCCCCAGAGCCTGGCCCTCCACCCTCTGTCATCACTTTTGCCCACCCAGCCCCCTCTGTCATTGTCCATGGGGGCAGTAGCAGTGGTGGAGGGGGGAGTGGGACGGCCAGCACAGGAGGGTCCCAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:7463472|7463600 hsa-miR-326 0 0 1
chr17:7463472|7463600 hsa-miR-484 0 0 1
chr17:7463472|7463600 hsa-miR-637 0 0 1
chr17:7463472|7463600 hsa-miR-541-5p 0 0 1
chr17:7463472|7463600 hsa-miR-541-3p 0 0 1
chr17:7463472|7463600 hsa-miR-760 0 1 1
chr17:7463472|7463600 hsa-miR-1293 0 0 1
chr17:7463472|7463600 hsa-miR-486-3p 0 0 1
chr17:7463472|7463600 hsa-miR-654-5p 0 0 1
chr17:7463472|7463600 hsa-miR-324-3p 0 0 1
chr17:7463472|7463600 hsa-miR-330-5p 0 0 1
chr17:7463472|7463600 hsa-miR-1302 0 0 1
chr17:7463472|7463600 hsa-miR-636 1 0 0
chr17:7463472|7463600 hsa-miR-762 1 0 0
chr17:7463472|7463600 hsa-miR-1913 0 1 0
chr17:7463472|7463600 hsa-miR-3138 1 1 0
chr17:7463472|7463600 hsa-miR-3147 1 0 0
chr17:7463472|7463600 hsa-miR-3155a 0 1 0
chr17:7463472|7463600 hsa-miR-3155b 0 1 0
chr17:7463472|7463600 hsa-miR-4492 0 1 0
chr17:7463472|7463600 hsa-miR-4498 0 1 0
chr17:7463472|7463600 hsa-miR-4505 0 1 0
chr17:7463472|7463600 hsa-miR-4507 1 0 0
chr17:7463472|7463600 hsa-miR-4508 1 0 0
chr17:7463472|7463600 hsa-miR-1587 1 0 0
chr17:7463472|7463600 hsa-miR-4651 1 0 0
chr17:7463472|7463600 hsa-miR-4739 1 0 0
chr17:7463472|7463600 hsa-miR-6085 1 0 0
chr17:7463472|7463600 hsa-miR-6133 1 0 0
chr17:7463472|7463600 hsa-miR-6745 0 1 0
chr17:7463472|7463600 hsa-miR-6861-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6894-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6880-5p 0 1 0
chr17:7463472|7463600 hsa-miR-7847-3p 0 1 0
chr17:7463472|7463600 hsa-miR-6744-5p 1 0 0
chr17:7463472|7463600 hsa-miR-4755-3p 0 1 0
chr17:7463472|7463600 hsa-miR-3682-3p 1 1 0
chr17:7463472|7463600 hsa-miR-6732-5p 1 1 0
chr17:7463472|7463600 hsa-miR-6805-5p 0 1 0
chr17:7463472|7463600 hsa-miR-6798-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6782-5p 1 0 0
chr17:7463472|7463600 hsa-miR-1226-5p 1 0 0
chr17:7463472|7463600 hsa-miR-1247-5p 0 1 0
chr17:7463472|7463600 hsa-miR-296-3p 1 0 0
chr17:7463472|7463600 hsa-miR-4667-3p 0 1 0
chr17:7463472|7463600 hsa-miR-6895-5p 0 1 0
chr17:7463472|7463600 hsa-miR-660-3p 0 1 0
chr17:7463472|7463600 hsa-miR-6887-3p 0 1 0
chr17:7463472|7463600 hsa-miR-6826-3p 0 1 0
chr17:7463472|7463600 hsa-miR-1914-5p 0 1 0
chr17:7463472|7463600 hsa-miR-4433a-5p 0 1 0
chr17:7463472|7463600 hsa-miR-4433b-5p 0 1 0
chr17:7463472|7463600 hsa-miR-3156-3p 0 1 0
chr17:7463472|7463600 hsa-miR-1233-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6769b-5p 1 0 0
chr17:7463472|7463600 hsa-miR-5001-5p 0 1 0
chr17:7463472|7463600 hsa-miR-6737-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6752-5p 1 1 0
chr17:7463472|7463600 hsa-miR-6756-5p 1 1 0
chr17:7463472|7463600 hsa-miR-6769a-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6803-5p 1 1 0
chr17:7463472|7463600 hsa-miR-6813-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6819-5p 1 0 0
chr17:7463472|7463600 hsa-miR-1249-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6751-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6797-5p 1 0 0
chr17:7463472|7463600 hsa-miR-7111-5p 1 0 0
chr17:7463472|7463600 hsa-miR-3620-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6836-5p 1 0 0
chr17:7463472|7463600 hsa-miR-10526-3p 1 0 0
chr17:7463472|7463600 hsa-miR-328-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6735-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6794-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6795-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6846-5p 1 1 0
chr17:7463472|7463600 hsa-miR-6848-5p 1 1 0
chr17:7463472|7463600 hsa-miR-4758-5p 1 0 0
chr17:7463472|7463600 hsa-miR-3940-5p 1 0 0
chr17:7463472|7463600 hsa-miR-6785-5p 1 0 0
chr17:7463472|7463600 hsa-miR-7114-3p 1 0 0
chr17:7463472|7463600 hsa-miR-10523-5p 0 1 0
chr17:7463472|7463600 hsa-miR-3913-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:7463472|7463600
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence LPQSLALHPLSSLLPTQPPLSLSMGAVAVVEGGVGRPAQEGPK
Nucleotide Sequence CTGCCCCAGAGCCTGGCCCTCCACCCTCTGTCATCACTTTTGCCCACCCAGCCCCCTCTGTCATTGTCCATGGGGGCAGTAGCAGTGGTGGAGGGGGGAGTGGGACGGCCAGCACAGGAGGGTCCCAAG
CircID chr17:7463472|7463600
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence LGPSCAGRPTPPSTTATAPMDNDRGGWVGKSDDRGWRARLWG
Nucleotide Sequence TTGGGACCCTCCTGTGCTGGCCGTCCCACTCCCCCCTCCACCACTGCTACTGCCCCCATGGACAATGACAGAGGGGGCTGGGTGGGCAAAAGTGATGACAGAGGGTGGAGGGCCAGGCTCTGGGGC
CircID chr17:7463472|7463600
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MAVPLPPPPLLLPPWTMTEGAGWAKVMTEGGGPGSGA
Nucleotide Sequence CTGGCCGTCCCACTCCCCCCTCCACCACTGCTACTGCCCCCATGGACAATGACAGAGGGGGCTGGGTGGGCAAAAGTGATGACAGAGGGTGGAGGGCCAGGCTCTGGGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab