CircRNA Information

General Information
circRNA Basic Information
CircID chr17:74951068|74951215
Strand +
CircType exon
Host Gene ENSG00000167861.14;
Algorism CIRI2;
Sequence TGTGCCCTAAGGGGTTTGACCAGGGAACCACGGGCTGTCCCTTGAGGTGCCTGGACAGGGTAAGGGGGTGCTTCCAGCCTCCTAACCCAAAGCCAGCTGTTCCAGGCTCCAGGGGAAAAAGGTGTGGCCAGGCTGCTCCTCGAGGAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:74951068|74951215 hsa-miR-198 0 0 1
chr17:74951068|74951215 hsa-miR-10a-5p 0 0 1
chr17:74951068|74951215 hsa-miR-10a-3p 0 0 1
chr17:74951068|74951215 hsa-miR-10b-5p 0 0 1
chr17:74951068|74951215 hsa-miR-10b-3p 0 0 1
chr17:74951068|74951215 hsa-miR-588 0 0 1
chr17:74951068|74951215 hsa-miR-611 0 0 1
chr17:74951068|74951215 hsa-miR-1296-5p 0 0 1
chr17:74951068|74951215 hsa-miR-1296-3p 0 0 1
chr17:74951068|74951215 hsa-miR-1228-5p 0 0 1
chr17:74951068|74951215 hsa-miR-1228-3p 0 0 1
chr17:74951068|74951215 hsa-miR-1258 0 0 1
chr17:74951068|74951215 hsa-miR-671-5p 0 0 1
chr17:74951068|74951215 hsa-miR-485-5p 0 0 1
chr17:74951068|74951215 hsa-miR-339-5p 0 1 1
chr17:74951068|74951215 hsa-miR-1207-3p 0 0 1
chr17:74951068|74951215 hsa-miR-331-3p 0 1 1
chr17:74951068|74951215 hsa-miR-151-5p 0 0 1
chr17:74951068|74951215 hsa-miR-1274a 0 0 1
chr17:74951068|74951215 hsa-miR-1254 0 0 1
chr17:74951068|74951215 hsa-miR-622 1 0 0
chr17:74951068|74951215 hsa-miR-2861 1 0 0
chr17:74951068|74951215 hsa-miR-4308 0 1 0
chr17:74951068|74951215 hsa-miR-4254 0 1 0
chr17:74951068|74951215 hsa-miR-4269 0 1 0
chr17:74951068|74951215 hsa-miR-3651 1 0 0
chr17:74951068|74951215 hsa-miR-4538 0 1 0
chr17:74951068|74951215 hsa-miR-4688 1 0 0
chr17:74951068|74951215 hsa-miR-5090 1 0 0
chr17:74951068|74951215 hsa-miR-6081 1 1 0
chr17:74951068|74951215 hsa-miR-218-1-3p 0 1 0
chr17:74951068|74951215 hsa-miR-4695-5p 0 1 0
chr17:74951068|74951215 hsa-miR-4755-3p 0 1 0
chr17:74951068|74951215 hsa-miR-6849-3p 1 0 0
chr17:74951068|74951215 hsa-miR-296-3p 1 0 0
chr17:74951068|74951215 hsa-miR-642b-5p 0 1 0
chr17:74951068|74951215 hsa-miR-4640-3p 0 1 0
chr17:74951068|74951215 hsa-miR-6813-3p 1 0 0
chr17:74951068|74951215 hsa-miR-6871-3p 0 1 0
chr17:74951068|74951215 hsa-miR-3940-3p 1 0 0
chr17:74951068|74951215 hsa-miR-6865-3p 0 1 0
chr17:74951068|74951215 hsa-miR-6856-3p 0 1 0
chr17:74951068|74951215 hsa-miR-1343-5p 1 0 0
chr17:74951068|74951215 hsa-miR-6743-5p 1 0 0
chr17:74951068|74951215 hsa-miR-7107-5p 1 0 0
chr17:74951068|74951215 hsa-miR-4685-3p 0 1 0
chr17:74951068|74951215 hsa-miR-4755-5p 0 1 0
chr17:74951068|74951215 hsa-miR-6889-5p 1 0 0
chr17:74951068|74951215 hsa-miR-3116 0 1 0
chr17:74951068|74951215 hsa-miR-6884-5p 0 1 0
chr17:74951068|74951215 hsa-miR-4701-5p 0 1 0
chr17:74951068|74951215 hsa-miR-1234-3p 1 0 0
chr17:74951068|74951215 hsa-miR-99b-3p 1 0 0
chr17:74951068|74951215 hsa-miR-151a-5p 0 1 0
chr17:74951068|74951215 hsa-miR-498-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:74951068|74951215
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MRCLDRVRGCFQPPNPKPAVPGSRGKRCGQAAPRG
Nucleotide Sequence TTGAGGTGCCTGGACAGGGTAAGGGGGTGCTTCCAGCCTCCTAACCCAAAGCCAGCTGTTCCAGGCTCCAGGGGAAAAAGGTGTGGCCAGGCTGCTCCTCGAGGA
CircID chr17:74951068|74951215
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MEPGTAGFGLGGWKHPLTLSRHLKGQPVVPWSNPLGH
Nucleotide Sequence CTGGAGCCTGGAACAGCTGGCTTTGGGTTAGGAGGCTGGAAGCACCCCCTTACCCTGTCCAGGCACCTCAAGGGACAGCCCGTGGTTCCCTGGTCAAACCCCTTAGGGCAC
CircID chr17:74951068|74951215
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MATPFSPGAWNSWLWVRRLEAPPYPVQAPQGTARGSLVKPLRA
Nucleotide Sequence CTGGCCACACCTTTTTCCCCTGGAGCCTGGAACAGCTGGCTTTGGGTTAGGAGGCTGGAAGCACCCCCTTACCCTGTCCAGGCACCTCAAGGGACAGCCCGTGGTTCCCTGGTCAAACCCCTTAGGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab