CircRNA Information

General Information
circRNA Basic Information
CircID chr17:7503265|7503490
Strand +
CircType exon
Host Gene ENSG00000181222.13;
Algorism CIRI2;
Sequence CCTCCACCACTTTGATGGGGTGCAGGTCGGAGGGAAGGCGTGGGTTGATGTGGAAGATTTTCTGAGCATTCCAGATCATCCGCAGCAGGTTACAGGGGAGGACGACCTGAGAGAGGGGGAAATGGAGGGAGGGCTGTGTCTGGGGACAGCCATCCAGGGAGGCACATCTCTAGCATCAGCACTTCGACCCACACGCACCTTGCTGTCTCCAGTTGGGAAGATGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:7503265|7503490 hsa-miR-18a-5p 0 0 1
chr17:7503265|7503490 hsa-miR-18a-3p 0 0 1
chr17:7503265|7503490 hsa-miR-136-5p 0 0 1
chr17:7503265|7503490 hsa-miR-136-3p 0 0 1
chr17:7503265|7503490 hsa-miR-206 0 0 1
chr17:7503265|7503490 hsa-miR-302a-5p 0 0 1
chr17:7503265|7503490 hsa-miR-302a-3p 0 0 1
chr17:7503265|7503490 hsa-miR-302b-5p 0 0 1
chr17:7503265|7503490 hsa-miR-302b-3p 0 0 1
chr17:7503265|7503490 hsa-miR-302c-5p 0 0 1
chr17:7503265|7503490 hsa-miR-302c-3p 0 0 1
chr17:7503265|7503490 hsa-miR-302d-5p 0 0 1
chr17:7503265|7503490 hsa-miR-302d-3p 0 0 1
chr17:7503265|7503490 hsa-miR-370-5p 0 0 1
chr17:7503265|7503490 hsa-miR-370-3p 0 0 1
chr17:7503265|7503490 hsa-miR-372-5p 0 0 1
chr17:7503265|7503490 hsa-miR-372-3p 0 0 1
chr17:7503265|7503490 hsa-miR-373-5p 0 0 1
chr17:7503265|7503490 hsa-miR-373-3p 0 0 1
chr17:7503265|7503490 hsa-miR-18b-5p 0 0 1
chr17:7503265|7503490 hsa-miR-18b-3p 0 0 1
chr17:7503265|7503490 hsa-miR-520e-5p 0 0 1
chr17:7503265|7503490 hsa-miR-520e-3p 0 0 1
chr17:7503265|7503490 hsa-miR-520b-5p 0 0 1
chr17:7503265|7503490 hsa-miR-520b-3p 0 0 1
chr17:7503265|7503490 hsa-miR-520g-5p 0 0 1
chr17:7503265|7503490 hsa-miR-520g-3p 0 0 1
chr17:7503265|7503490 hsa-miR-520h 0 0 1
chr17:7503265|7503490 hsa-miR-613 0 0 1
chr17:7503265|7503490 hsa-miR-649 0 0 1
chr17:7503265|7503490 hsa-miR-1299 0 0 1
chr17:7503265|7503490 hsa-miR-1266-5p 0 0 1
chr17:7503265|7503490 hsa-miR-1266-3p 0 0 1
chr17:7503265|7503490 hsa-miR-302e 0 0 1
chr17:7503265|7503490 hsa-miR-512-3p 0 1 1
chr17:7503265|7503490 hsa-miR-490-3p 0 0 1
chr17:7503265|7503490 hsa-miR-331-3p 0 0 1
chr17:7503265|7503490 hsa-miR-576-3p 0 0 1
chr17:7503265|7503490 hsa-miR-875-3p 0 0 1
chr17:7503265|7503490 hsa-miR-455-5p 0 1 1
chr17:7503265|7503490 hsa-miR-520d-3p 0 0 1
chr17:7503265|7503490 hsa-miR-520a-3p 0 0 1
chr17:7503265|7503490 hsa-miR-520c-3p 0 1 1
chr17:7503265|7503490 hsa-miR-886-5p 0 0 1
chr17:7503265|7503490 hsa-miR-550 0 0 1
chr17:7503265|7503490 hsa-miR-642 0 0 1
chr17:7503265|7503490 hsa-miR-1 0 0 1
chr17:7503265|7503490 hsa-miR-1470 1 1 0
chr17:7503265|7503490 hsa-miR-3183 1 1 0
chr17:7503265|7503490 hsa-miR-4269 0 1 0
chr17:7503265|7503490 hsa-miR-4290 1 1 0
chr17:7503265|7503490 hsa-miR-4469 1 1 0
chr17:7503265|7503490 hsa-miR-8075 0 1 0
chr17:7503265|7503490 hsa-miR-432-3p 0 1 0
chr17:7503265|7503490 hsa-miR-6749-3p 1 1 0
chr17:7503265|7503490 hsa-miR-6747-3p 1 0 0
chr17:7503265|7503490 hsa-miR-6892-3p 1 0 0
chr17:7503265|7503490 hsa-miR-3692-3p 0 1 0
chr17:7503265|7503490 hsa-miR-6759-5p 1 0 0
chr17:7503265|7503490 hsa-miR-7110-3p 1 1 0
chr17:7503265|7503490 hsa-miR-6845-3p 1 0 0
chr17:7503265|7503490 hsa-miR-4713-5p 1 0 0
chr17:7503265|7503490 hsa-miR-5001-3p 1 0 0
chr17:7503265|7503490 hsa-miR-7113-3p 1 1 0
chr17:7503265|7503490 hsa-miR-4756-3p 0 1 0
chr17:7503265|7503490 hsa-miR-889-5p 0 1 0
chr17:7503265|7503490 hsa-miR-7111-3p 1 0 0
chr17:7503265|7503490 hsa-miR-4667-3p 1 0 0
chr17:7503265|7503490 hsa-miR-4646-3p 1 0 0
chr17:7503265|7503490 hsa-miR-7106-3p 0 1 0
chr17:7503265|7503490 hsa-miR-4687-5p 0 1 0
chr17:7503265|7503490 hsa-miR-6867-3p 0 1 0
chr17:7503265|7503490 hsa-miR-6887-3p 1 1 0
chr17:7503265|7503490 hsa-miR-6778-3p 0 1 0
chr17:7503265|7503490 hsa-miR-6837-3p 1 0 0
chr17:7503265|7503490 hsa-miR-2355-5p 0 1 0
chr17:7503265|7503490 hsa-miR-6826-3p 1 0 0
chr17:7503265|7503490 hsa-miR-6856-3p 0 1 0
chr17:7503265|7503490 hsa-miR-6886-3p 1 0 0
chr17:7503265|7503490 hsa-miR-6795-3p 1 0 0
chr17:7503265|7503490 hsa-miR-6794-3p 1 0 0
chr17:7503265|7503490 hsa-miR-6880-3p 1 1 0
chr17:7503265|7503490 hsa-miR-6883-3p 1 0 0
chr17:7503265|7503490 hsa-miR-3173-5p 1 0 0
chr17:7503265|7503490 hsa-miR-6734-3p 1 1 0
chr17:7503265|7503490 hsa-miR-1249-3p 1 0 0
chr17:7503265|7503490 hsa-miR-6780b-3p 1 0 0
chr17:7503265|7503490 hsa-miR-431-3p 0 1 0
chr17:7503265|7503490 hsa-miR-6769b-5p 1 0 0
chr17:7503265|7503490 hsa-miR-10401-5p 0 1 0
chr17:7503265|7503490 hsa-miR-3127-3p 1 0 0
chr17:7503265|7503490 hsa-miR-320a-5p 1 0 0
chr17:7503265|7503490 hsa-miR-6756-3p 1 0 0
chr17:7503265|7503490 hsa-miR-6810-3p 1 0 0
chr17:7503265|7503490 hsa-miR-4723-3p 1 1 0
chr17:7503265|7503490 hsa-miR-6769b-3p 1 0 0
chr17:7503265|7503490 hsa-miR-7114-3p 0 1 0
chr17:7503265|7503490 hsa-miR-6744-3p 1 0 0
chr17:7503265|7503490 hsa-miR-6827-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:7503265|7503490
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MSIPDHPQQVTGEDDLREGEMEGGLCLGTAIQGGTSLASALRPTRTLLSPVGKMT
Nucleotide Sequence CTGAGCATTCCAGATCATCCGCAGCAGGTTACAGGGGAGGACGACCTGAGAGAGGGGGAAATGGAGGGAGGGCTGTGTCTGGGGACAGCCATCCAGGGAGGCACATCTCTAGCATCAGCACTTCGACCCACACGCACCTTGCTGTCTCCAGTTGGGAAGATGACC
CircID chr17:7503265|7503490
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MDGCPQTQPSLHFPLSQVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVE
Nucleotide Sequence CTGGATGGCTGTCCCCAGACACAGCCCTCCCTCCATTTCCCCCTCTCTCAGGTCGTCCTCCCCTGTAACCTGCTGCGGATGATCTGGAATGCTCAGAAAATCTTCCACATCAACCCACGCCTTCCCTCCGACCTGCACCCCATCAAAGTGGTGGAG
CircID chr17:7503265|7503490
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MAVPRHSPPSISPSLRSSSPVTCCG
Nucleotide Sequence ATGGCTGTCCCCAGACACAGCCCTCCCTCCATTTCCCCCTCTCTCAGGTCGTCCTCCCCTGTAACCTGCTGCGGATGA
CircID chr17:7503265|7503490
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence METARCVWVEVLMLEMCLPGWLSPDTALPPFPPLSGRPPL
Nucleotide Sequence CTGGAGACAGCAAGGTGCGTGTGGGTCGAAGTGCTGATGCTAGAGATGTGCCTCCCTGGATGGCTGTCCCCAGACACAGCCCTCCCTCCATTTCCCCCTCTCTCAGGTCGTCCTCCCCTGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab