CircRNA Information

General Information
circRNA Basic Information
CircID chr17:75065188|75065500
Strand +
CircType exon
Host Gene ENSG00000180901.9;
Algorism CIRI2;
Sequence CTGGGGCAGAGAAAAAGGCAGGACCCTCCCCACTTGGCAGTACTGGGCAGCAGAGAGTGTGGGTCACTGGTCACGTGACAGCCCCAAACTGCCACGCAGACCTCTCTGATGTGATCAGCCAGACACTCAGAGGGCACAACGCTTTCAAGCAAGAACACCAGCCTGGTTCCTAAAGGGGGTGGGTGAACAACGCTCCCAGAAATCTTAAGAACCCAGAGTCCTGGAGCGCTGGAACAATACAGGTGTCATTGGGTTGCAGCGAGGAGGGAAACTTGGTGAACACCAGCCCTCCGAGAGGGCGGAAATACCACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:75065188|75065500 hsa-miR-197-5p 0 0 1
chr17:75065188|75065500 hsa-miR-197-3p 0 0 1
chr17:75065188|75065500 hsa-miR-34a-5p 0 0 1
chr17:75065188|75065500 hsa-miR-34a-3p 0 0 1
chr17:75065188|75065500 hsa-miR-149-5p 0 0 1
chr17:75065188|75065500 hsa-miR-149-3p 0 0 1
chr17:75065188|75065500 hsa-miR-326 0 0 1
chr17:75065188|75065500 hsa-miR-425-5p 0 0 1
chr17:75065188|75065500 hsa-miR-425-3p 0 0 1
chr17:75065188|75065500 hsa-miR-449a 0 0 1
chr17:75065188|75065500 hsa-miR-488-5p 0 0 1
chr17:75065188|75065500 hsa-miR-488-3p 0 0 1
chr17:75065188|75065500 hsa-miR-639 0 0 1
chr17:75065188|75065500 hsa-miR-651-5p 0 0 1
chr17:75065188|75065500 hsa-miR-651-3p 0 0 1
chr17:75065188|75065500 hsa-miR-449b-5p 0 0 1
chr17:75065188|75065500 hsa-miR-449b-3p 0 0 1
chr17:75065188|75065500 hsa-miR-665 0 0 1
chr17:75065188|75065500 hsa-miR-920 0 0 1
chr17:75065188|75065500 hsa-miR-939-5p 0 0 1
chr17:75065188|75065500 hsa-miR-939-3p 0 0 1
chr17:75065188|75065500 hsa-miR-1231 0 0 1
chr17:75065188|75065500 hsa-miR-1278 0 0 1
chr17:75065188|75065500 hsa-miR-770-5p 0 1 1
chr17:75065188|75065500 hsa-miR-491-5p 0 0 1
chr17:75065188|75065500 hsa-miR-574-5p 0 0 1
chr17:75065188|75065500 hsa-miR-324-3p 0 0 1
chr17:75065188|75065500 hsa-miR-330-5p 0 0 1
chr17:75065188|75065500 hsa-miR-34c-5p 0 0 1
chr17:75065188|75065500 hsa-miR-642 0 0 1
chr17:75065188|75065500 hsa-miR-138 0 0 1
chr17:75065188|75065500 hsa-miR-720 0 0 1
chr17:75065188|75065500 hsa-miR-649 0 1 0
chr17:75065188|75065500 hsa-miR-760 1 0 0
chr17:75065188|75065500 hsa-miR-718 0 1 0
chr17:75065188|75065500 hsa-miR-3137 1 0 0
chr17:75065188|75065500 hsa-miR-4480 0 1 0
chr17:75065188|75065500 hsa-miR-4497 1 0 0
chr17:75065188|75065500 hsa-miR-4675 0 1 0
chr17:75065188|75065500 hsa-miR-4739 1 0 0
chr17:75065188|75065500 hsa-miR-4741 0 1 0
chr17:75065188|75065500 hsa-miR-5193 0 1 0
chr17:75065188|75065500 hsa-miR-6071 1 1 0
chr17:75065188|75065500 hsa-miR-7978 0 1 0
chr17:75065188|75065500 hsa-miR-138-5p 0 1 0
chr17:75065188|75065500 hsa-miR-511-5p 0 1 0
chr17:75065188|75065500 hsa-miR-6840-3p 1 0 0
chr17:75065188|75065500 hsa-miR-4700-3p 1 0 0
chr17:75065188|75065500 hsa-miR-3194-3p 1 1 0
chr17:75065188|75065500 hsa-miR-6747-3p 1 1 0
chr17:75065188|75065500 hsa-miR-6857-5p 1 0 0
chr17:75065188|75065500 hsa-miR-6799-5p 1 0 0
chr17:75065188|75065500 hsa-miR-3192-5p 0 1 0
chr17:75065188|75065500 hsa-miR-1915-5p 1 0 0
chr17:75065188|75065500 hsa-miR-6832-3p 0 1 0
chr17:75065188|75065500 hsa-miR-6845-3p 1 1 0
chr17:75065188|75065500 hsa-miR-185-3p 0 1 0
chr17:75065188|75065500 hsa-miR-6821-5p 0 1 0
chr17:75065188|75065500 hsa-miR-6882-3p 1 0 0
chr17:75065188|75065500 hsa-miR-3944-3p 1 0 0
chr17:75065188|75065500 hsa-miR-4667-3p 0 1 0
chr17:75065188|75065500 hsa-miR-4446-3p 0 1 0
chr17:75065188|75065500 hsa-miR-1911-3p 0 1 0
chr17:75065188|75065500 hsa-miR-6738-3p 1 0 0
chr17:75065188|75065500 hsa-miR-541-5p 1 0 0
chr17:75065188|75065500 hsa-miR-6838-3p 1 0 0
chr17:75065188|75065500 hsa-miR-1343-5p 1 0 0
chr17:75065188|75065500 hsa-miR-4685-5p 1 0 0
chr17:75065188|75065500 hsa-miR-6848-5p 1 1 0
chr17:75065188|75065500 hsa-miR-6856-5p 1 1 0
chr17:75065188|75065500 hsa-miR-6822-5p 1 0 0
chr17:75065188|75065500 hsa-miR-6893-3p 1 0 0
chr17:75065188|75065500 hsa-miR-7114-3p 0 1 0
chr17:75065188|75065500 hsa-miR-6874-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:75065188|75065500
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence LGQRKRQDPPHLAVLGSRECGSLVT
Nucleotide Sequence CTGGGGCAGAGAAAAAGGCAGGACCCTCCCCACTTGGCAGTACTGGGCAGCAGAGAGTGTGGGTCACTGGTCACGTGA
CircID chr17:75065188|75065500
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MERWNNTGVIGLQRGGKLGEHQPSERAEIPL
Nucleotide Sequence CTGGAGCGCTGGAACAATACAGGTGTCATTGGGTTGCAGCGAGGAGGGAAACTTGGTGAACACCAGCCCTCCGAGAGGGCGGAAATACCACTC
CircID chr17:75065188|75065500
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MVFTKFPSSLQPNDTCIVPALQDSGFLRFLGALFTHPL
Nucleotide Sequence CTGGTGTTCACCAAGTTTCCCTCCTCGCTGCAACCCAATGACACCTGTATTGTTCCAGCGCTCCAGGACTCTGGGTTCTTAAGATTTCTGGGAGCGTTGTTCACCCACCCCCTTTAG
CircID chr17:75065188|75065500
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MKALCPLSVWLITSERSAWQFGAVT
Nucleotide Sequence TTGAAAGCGTTGTGCCCTCTGAGTGTCTGGCTGATCACATCAGAGAGGTCTGCGTGGCAGTTTGGGGCTGTCACGTGA
CircID chr17:75065188|75065500
ORF Type ORF5
Protein Length 80
Nucleotide Length 240
Protein Sequence MYCSSAPGLWVLKISGSVVHPPPLGTRLVFLLESVVPSECLADHIREVCVAVWGCHVTSDPHSLLPSTAKWGGSCLFLCP
Nucleotide Sequence CTGTATTGTTCCAGCGCTCCAGGACTCTGGGTTCTTAAGATTTCTGGGAGCGTTGTTCACCCACCCCCTTTAGGAACCAGGCTGGTGTTCTTGCTTGAAAGCGTTGTGCCCTCTGAGTGTCTGGCTGATCACATCAGAGAGGTCTGCGTGGCAGTTTGGGGCTGTCACGTGACCAGTGACCCACACTCTCTGCTGCCCAGTACTGCCAAGTGGGGAGGGTCCTGCCTTTTTCTCTGCCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab