CircRNA Information

General Information
circRNA Basic Information
CircID chr17:75130385|75130563
Strand -
CircType exon
Host Gene ENSG00000125458.5;
Algorism CIRI2;
Sequence GGGGCCAGAGGCACCAGCACGATGCCGCCCCGACTCGGCTCTGCGGTGGCCCCTGTGGGCCTGCCCTTCCTTTAGCTCCAGCTGCTGCCCGCGGCATCCCCGCTCATTCCCGCTGCGCAGCTCCGCGCTTGCTATCTAAGATCTCCCTCCAGTTGTCACTCCAGGAGAGCAGCCGTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:75130385|75130563 hsa-miR-122-5p 0 0 1
chr17:75130385|75130563 hsa-miR-122-3p 0 0 1
chr17:75130385|75130563 hsa-miR-558 0 0 1
chr17:75130385|75130563 hsa-miR-610 0 0 1
chr17:75130385|75130563 hsa-miR-646 0 1 1
chr17:75130385|75130563 hsa-miR-542-5p 0 0 1
chr17:75130385|75130563 hsa-miR-1207-3p 0 0 1
chr17:75130385|75130563 hsa-miR-220c 0 0 1
chr17:75130385|75130563 hsa-miR-138 0 0 1
chr17:75130385|75130563 hsa-miR-549 0 0 1
chr17:75130385|75130563 hsa-miR-107 1 0 0
chr17:75130385|75130563 hsa-miR-608 1 0 0
chr17:75130385|75130563 hsa-miR-650 1 0 0
chr17:75130385|75130563 hsa-miR-663a 1 1 0
chr17:75130385|75130563 hsa-miR-762 1 0 0
chr17:75130385|75130563 hsa-miR-1183 1 0 0
chr17:75130385|75130563 hsa-miR-548q 0 1 0
chr17:75130385|75130563 hsa-miR-3138 1 0 0
chr17:75130385|75130563 hsa-miR-3147 1 0 0
chr17:75130385|75130563 hsa-miR-3196 1 1 0
chr17:75130385|75130563 hsa-miR-3621 1 0 0
chr17:75130385|75130563 hsa-miR-3135b 1 1 0
chr17:75130385|75130563 hsa-miR-4479 1 0 0
chr17:75130385|75130563 hsa-miR-4526 1 0 0
chr17:75130385|75130563 hsa-miR-4533 1 0 0
chr17:75130385|75130563 hsa-miR-4537 0 1 0
chr17:75130385|75130563 hsa-miR-3960 1 0 0
chr17:75130385|75130563 hsa-miR-4706 1 1 0
chr17:75130385|75130563 hsa-miR-4734 1 0 0
chr17:75130385|75130563 hsa-miR-4739 1 1 0
chr17:75130385|75130563 hsa-miR-4741 1 0 0
chr17:75130385|75130563 hsa-miR-4754 1 0 0
chr17:75130385|75130563 hsa-miR-4767 1 0 0
chr17:75130385|75130563 hsa-miR-4779 1 0 0
chr17:75130385|75130563 hsa-miR-6127 1 0 0
chr17:75130385|75130563 hsa-miR-8072 1 0 0
chr17:75130385|75130563 hsa-miR-8077 1 0 0
chr17:75130385|75130563 hsa-miR-12115 1 0 0
chr17:75130385|75130563 hsa-miR-12120 1 0 0
chr17:75130385|75130563 hsa-miR-6734-5p 1 0 0
chr17:75130385|75130563 hsa-miR-504-3p 1 0 0
chr17:75130385|75130563 hsa-miR-6765-5p 1 0 0
chr17:75130385|75130563 hsa-miR-4687-3p 1 0 0
chr17:75130385|75130563 hsa-miR-6799-5p 1 0 0
chr17:75130385|75130563 hsa-miR-1236-5p 1 1 0
chr17:75130385|75130563 hsa-miR-6820-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6762-3p 0 1 0
chr17:75130385|75130563 hsa-miR-6727-5p 1 1 0
chr17:75130385|75130563 hsa-miR-6721-5p 1 0 0
chr17:75130385|75130563 hsa-miR-432-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6798-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6760-5p 1 1 0
chr17:75130385|75130563 hsa-miR-6874-5p 0 1 0
chr17:75130385|75130563 hsa-miR-1226-5p 1 0 0
chr17:75130385|75130563 hsa-miR-885-3p 1 1 0
chr17:75130385|75130563 hsa-miR-3648 1 1 0
chr17:75130385|75130563 hsa-miR-4787-5p 1 1 0
chr17:75130385|75130563 hsa-miR-149-3p 1 0 0
chr17:75130385|75130563 hsa-miR-937-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6877-5p 1 0 0
chr17:75130385|75130563 hsa-miR-7112-5p 1 0 0
chr17:75130385|75130563 hsa-miR-744-5p 1 0 0
chr17:75130385|75130563 hsa-miR-2277-5p 1 0 0
chr17:75130385|75130563 hsa-miR-4763-3p 1 0 0
chr17:75130385|75130563 hsa-miR-6787-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6812-5p 1 1 0
chr17:75130385|75130563 hsa-miR-6816-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6870-5p 1 0 0
chr17:75130385|75130563 hsa-miR-5001-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6726-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6737-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6743-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6752-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6803-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6813-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6819-5p 1 0 0
chr17:75130385|75130563 hsa-miR-1249-5p 1 1 0
chr17:75130385|75130563 hsa-miR-6751-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6780a-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6797-5p 1 1 0
chr17:75130385|75130563 hsa-miR-4728-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6836-5p 1 0 0
chr17:75130385|75130563 hsa-miR-10396a-5p 1 0 0
chr17:75130385|75130563 hsa-miR-10396b-5p 1 0 0
chr17:75130385|75130563 hsa-miR-1909-3p 1 0 0
chr17:75130385|75130563 hsa-miR-328-5p 1 0 0
chr17:75130385|75130563 hsa-miR-4632-5p 1 0 0
chr17:75130385|75130563 hsa-miR-4745-5p 1 1 0
chr17:75130385|75130563 hsa-miR-4749-5p 1 1 0
chr17:75130385|75130563 hsa-miR-6735-5p 0 1 0
chr17:75130385|75130563 hsa-miR-6777-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6794-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6795-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6887-5p 1 0 0
chr17:75130385|75130563 hsa-miR-3187-5p 1 0 0
chr17:75130385|75130563 hsa-miR-4436b-3p 0 1 0
chr17:75130385|75130563 hsa-miR-4723-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6845-5p 0 1 0
chr17:75130385|75130563 hsa-miR-939-5p 1 0 0
chr17:75130385|75130563 hsa-miR-4758-5p 1 0 0
chr17:75130385|75130563 hsa-miR-5586-3p 1 0 0
chr17:75130385|75130563 hsa-miR-3198 1 0 0
chr17:75130385|75130563 hsa-miR-6876-5p 0 1 0
chr17:75130385|75130563 hsa-miR-6791-5p 1 0 0
chr17:75130385|75130563 hsa-miR-6762-5p 0 1 0
chr17:75130385|75130563 hsa-miR-3619-5p 1 0 0
chr17:75130385|75130563 hsa-miR-549a-3p 0 1 0
chr17:75130385|75130563 hsa-miR-4781-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:75130385|75130563
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MLPAASPLIPAAQLRACYLRSPSSCHSRRAAV
Nucleotide Sequence CTGCTGCCCGCGGCATCCCCGCTCATTCCCGCTGCGCAGCTCCGCGCTTGCTATCTAAGATCTCCCTCCAGTTGTCACTCCAGGAGAGCAGCCGTC
CircID chr17:75130385|75130563
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MRWPLWACPSFSSSCCPRHPRSFPLRSSALAI
Nucleotide Sequence CTGCGGTGGCCCCTGTGGGCCTGCCCTTCCTTTAGCTCCAGCTGCTGCCCGCGGCATCCCCGCTCATTCCCGCTGCGCAGCTCCGCGCTTGCTATCTAA
CircID chr17:75130385|75130563
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MPRAAAGAKGRAGPQGPPQSRVGAASCWCLWP
Nucleotide Sequence ATGCCGCGGGCAGCAGCTGGAGCTAAAGGAAGGGCAGGCCCACAGGGGCCACCGCAGAGCCGAGTCGGGGCGGCATCGTGCTGGTGCCTCTGGCCC
CircID chr17:75130385|75130563
ORF Type ORF4
Protein Length 40
Nucleotide Length 120
Protein Sequence MRSGNERGCRGQQLELKEGQAHRGHRRAESGRHRAGASGP
Nucleotide Sequence CTGCGCAGCGGGAATGAGCGGGGATGCCGCGGGCAGCAGCTGGAGCTAAAGGAAGGGCAGGCCCACAGGGGCCACCGCAGAGCCGAGTCGGGGCGGCATCGTGCTGGTGCCTCTGGCCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab