CircRNA Information

General Information
circRNA Basic Information
CircID chr17:7560069|7560385
Strand +
CircType exon
Host Gene ENSG00000248871.1;
Algorism CIRI2;
Sequence CTGACCCATGGTGAAAGTCACGTCTTGAAACAGGACCTGGCAGGGAAGGGAGATGTTGAAGAAAACAGGATGGCCTGGCTCAGTTCTGGGAGGCCTCAGGAGCGCTAACGAGGGAAGAAAGAAGGGTCTGCTGGGTTTGGTATGAATAGAGGGGTCAGGAACCCTCAGTAGGGGGCCAAAGAGGCCCTCTGTGAAGCTCAGAGTGTGGCTGGGGTTACCTGGCTATACAGCAGATAAACTCCAGCATCCTGGATTCGGACACCATATCCTTGGGCCTGTAGGCCTCTCCCACGCCTAAGAGCTGGTTGCCACATCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:7560069|7560385 hsa-miR-27a-5p 0 0 1
chr17:7560069|7560385 hsa-miR-27a-3p 0 0 1
chr17:7560069|7560385 hsa-miR-197-5p 0 0 1
chr17:7560069|7560385 hsa-miR-197-3p 0 0 1
chr17:7560069|7560385 hsa-miR-27b-5p 0 0 1
chr17:7560069|7560385 hsa-miR-27b-3p 0 0 1
chr17:7560069|7560385 hsa-miR-328-5p 0 0 1
chr17:7560069|7560385 hsa-miR-328-3p 0 0 1
chr17:7560069|7560385 hsa-miR-498-5p 0 0 1
chr17:7560069|7560385 hsa-miR-498-3p 0 0 1
chr17:7560069|7560385 hsa-miR-575 0 0 1
chr17:7560069|7560385 hsa-miR-421 0 0 1
chr17:7560069|7560385 hsa-miR-665 1 0 1
chr17:7560069|7560385 hsa-miR-922 0 0 1
chr17:7560069|7560385 hsa-miR-1200 0 1 1
chr17:7560069|7560385 hsa-miR-1287-5p 0 0 1
chr17:7560069|7560385 hsa-miR-1287-3p 0 0 1
chr17:7560069|7560385 hsa-miR-1248 0 0 1
chr17:7560069|7560385 hsa-miR-513a-5p 0 0 1
chr17:7560069|7560385 hsa-miR-485-3p 0 0 1
chr17:7560069|7560385 hsa-miR-1274a 0 0 1
chr17:7560069|7560385 hsa-miR-642 0 0 1
chr17:7560069|7560385 hsa-miR-1308 0 0 1
chr17:7560069|7560385 hsa-miR-9 0 0 1
chr17:7560069|7560385 hsa-miR-664 0 0 1
chr17:7560069|7560385 hsa-miR-623 1 0 0
chr17:7560069|7560385 hsa-miR-1203 1 0 0
chr17:7560069|7560385 hsa-miR-3166 1 0 0
chr17:7560069|7560385 hsa-miR-3169 0 1 0
chr17:7560069|7560385 hsa-miR-4268 1 0 0
chr17:7560069|7560385 hsa-miR-4290 1 0 0
chr17:7560069|7560385 hsa-miR-3921 0 1 0
chr17:7560069|7560385 hsa-miR-4494 1 0 0
chr17:7560069|7560385 hsa-miR-4512 0 1 0
chr17:7560069|7560385 hsa-miR-4651 1 0 0
chr17:7560069|7560385 hsa-miR-4683 1 0 0
chr17:7560069|7560385 hsa-miR-4686 0 1 0
chr17:7560069|7560385 hsa-miR-103a-2-5p 1 0 0
chr17:7560069|7560385 hsa-miR-6749-3p 1 0 0
chr17:7560069|7560385 hsa-miR-15a-3p 0 1 0
chr17:7560069|7560385 hsa-miR-6089 1 0 0
chr17:7560069|7560385 hsa-miR-6875-3p 1 1 0
chr17:7560069|7560385 hsa-miR-23b-5p 0 1 0
chr17:7560069|7560385 hsa-miR-6832-3p 1 1 0
chr17:7560069|7560385 hsa-miR-4725-5p 1 0 0
chr17:7560069|7560385 hsa-miR-877-3p 1 0 0
chr17:7560069|7560385 hsa-miR-4655-3p 1 1 0
chr17:7560069|7560385 hsa-miR-23a-5p 0 1 0
chr17:7560069|7560385 hsa-miR-6782-5p 1 0 0
chr17:7560069|7560385 hsa-miR-5008-5p 1 0 0
chr17:7560069|7560385 hsa-miR-6740-3p 1 0 0
chr17:7560069|7560385 hsa-miR-4713-5p 1 0 0
chr17:7560069|7560385 hsa-miR-6853-5p 0 1 0
chr17:7560069|7560385 hsa-miR-4786-3p 1 0 0
chr17:7560069|7560385 hsa-miR-4691-3p 0 1 0
chr17:7560069|7560385 hsa-miR-30c-2-3p 0 1 0
chr17:7560069|7560385 hsa-miR-7113-3p 1 0 0
chr17:7560069|7560385 hsa-miR-3667-3p 1 0 0
chr17:7560069|7560385 hsa-miR-6821-3p 1 0 0
chr17:7560069|7560385 hsa-miR-6809-3p 1 0 0
chr17:7560069|7560385 hsa-miR-6830-3p 1 1 0
chr17:7560069|7560385 hsa-miR-5196-3p 1 0 0
chr17:7560069|7560385 hsa-miR-4446-5p 0 1 0
chr17:7560069|7560385 hsa-miR-378a-5p 0 1 0
chr17:7560069|7560385 hsa-miR-6824-5p 1 0 0
chr17:7560069|7560385 hsa-miR-6877-5p 1 0 0
chr17:7560069|7560385 hsa-miR-1237-3p 1 0 0
chr17:7560069|7560385 hsa-miR-1236-3p 1 0 0
chr17:7560069|7560385 hsa-miR-4742-3p 1 0 0
chr17:7560069|7560385 hsa-miR-4732-3p 0 1 0
chr17:7560069|7560385 hsa-miR-4999-5p 0 1 0
chr17:7560069|7560385 hsa-miR-6867-3p 0 1 0
chr17:7560069|7560385 hsa-miR-2276-5p 1 0 0
chr17:7560069|7560385 hsa-miR-6814-5p 0 1 0
chr17:7560069|7560385 hsa-miR-503-3p 1 0 0
chr17:7560069|7560385 hsa-miR-6886-3p 1 1 0
chr17:7560069|7560385 hsa-miR-5088-3p 1 1 0
chr17:7560069|7560385 hsa-miR-4649-3p 0 1 0
chr17:7560069|7560385 hsa-miR-6851-3p 1 0 0
chr17:7560069|7560385 hsa-miR-6734-3p 1 1 0
chr17:7560069|7560385 hsa-miR-6759-3p 1 1 0
chr17:7560069|7560385 hsa-miR-6803-5p 1 0 0
chr17:7560069|7560385 hsa-miR-7111-5p 1 0 0
chr17:7560069|7560385 hsa-miR-3127-3p 1 0 0
chr17:7560069|7560385 hsa-miR-320a-5p 1 1 0
chr17:7560069|7560385 hsa-miR-4685-3p 1 1 0
chr17:7560069|7560385 hsa-miR-6836-5p 1 0 0
chr17:7560069|7560385 hsa-miR-4649-5p 1 0 0
chr17:7560069|7560385 hsa-miR-30c-1-3p 0 1 0
chr17:7560069|7560385 hsa-miR-1199-5p 0 1 0
chr17:7560069|7560385 hsa-miR-7151-3p 0 1 0
chr17:7560069|7560385 hsa-miR-3679-5p 1 0 0
chr17:7560069|7560385 hsa-miR-3184-5p 1 1 0
chr17:7560069|7560385 hsa-miR-2682-3p 1 0 0
chr17:7560069|7560385 hsa-miR-6791-5p 1 0 0
chr17:7560069|7560385 hsa-miR-4722-3p 0 1 0
chr17:7560069|7560385 hsa-miR-6727-3p 0 1 0
chr17:7560069|7560385 hsa-miR-4757-5p 0 1 0
chr17:7560069|7560385 hsa-miR-6744-3p 0 1 0
chr17:7560069|7560385 hsa-miR-4690-3p 1 0 0
chr17:7560069|7560385 hsa-miR-103a-1-5p 1 0 0
chr17:7560069|7560385 hsa-miR-5699-3p 1 0 0
chr17:7560069|7560385 hsa-miR-6820-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:7560069|7560385
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence LTHGESHVLKQDLAGKGDVEENRMAWLSSGRPQER
Nucleotide Sequence CTGACCCATGGTGAAAGTCACGTCTTGAAACAGGACCTGGCAGGGAAGGGAGATGTTGAAGAAAACAGGATGGCCTGGCTCAGTTCTGGGAGGCCTCAGGAGCGCTAA
CircID chr17:7560069|7560385
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MLKKTGWPGSVLGGLRSANEGRKKGLLGLV
Nucleotide Sequence ATGTTGAAGAAAACAGGATGGCCTGGCTCAGTTCTGGGAGGCCTCAGGAGCGCTAACGAGGGAAGAAAGAAGGGTCTGCTGGGTTTGGTATGA
CircID chr17:7560069|7560385
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MGLPGYTADKLQHPGFGHHILGPVGLSHA
Nucleotide Sequence CTGGGGTTACCTGGCTATACAGCAGATAAACTCCAGCATCCTGGATTCGGACACCATATCCTTGGGCCTGTAGGCCTCTCCCACGCCTAA
CircID chr17:7560069|7560385
ORF Type ORF4
Protein Length 38
Nucleotide Length 117
Protein Sequence MWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVTPATL
Nucleotide Sequence ATGTGGCAACCAGCTCTTAGGCGTGGGAGAGGCCTACAGGCCCAAGGATATGGTGTCCGAATCCAGGATGCTGGAGTTTATCTGCTGTATAGCCAGGTAACCCCAGCCACACTCTGA
CircID chr17:7560069|7560385
ORF Type ORF5
Protein Length 67
Nucleotide Length 201
Protein Sequence MSFTEGLFGPLLRVPDPSIHTKPSRPFFLPSLALLRPPRTEPGHPVFFNISLPCQVLFQDVTFTMGQ
Nucleotide Sequence CTGAGCTTCACAGAGGGCCTCTTTGGCCCCCTACTGAGGGTTCCTGACCCCTCTATTCATACCAAACCCAGCAGACCCTTCTTTCTTCCCTCGTTAGCGCTCCTGAGGCCTCCCAGAACTGAGCCAGGCCATCCTGTTTTCTTCAACATCTCCCTTCCCTGCCAGGTCCTGTTTCAAGACGTGACTTTCACCATGGGTCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab