CircRNA Information

General Information
circRNA Basic Information
CircID chr17:760013|760238
Strand -
CircType exon
Host Gene ENSG00000167699.12;
Algorism CIRI2;
Sequence ATCAGAGCTTTCAAAGATTGAAATACACAAATCTGCACTACCCAAGCCTCCTTGCCTGTACGGGAAACAAATCAGAAGAGCATTTATTGGGAACTGACACGTCAGGCCTCACAGGTGCTGGGCAGGAATCACAGAGGCTTGCTCTGCATCATGTCTTCCGTTAACCTGAAGCTTTGGGTTTATTGTGTTTGGCAAACCACTCGTCACTTTTATCTGCTGCCATTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:760013|760238 hsa-miR-223-5p 0 0 1
chr17:760013|760238 hsa-miR-223-3p 0 0 1
chr17:760013|760238 hsa-miR-130a-5p 0 0 1
chr17:760013|760238 hsa-miR-130a-3p 0 0 1
chr17:760013|760238 hsa-miR-191-5p 0 0 1
chr17:760013|760238 hsa-miR-191-3p 0 0 1
chr17:760013|760238 hsa-miR-301a-5p 0 0 1
chr17:760013|760238 hsa-miR-301a-3p 0 0 1
chr17:760013|760238 hsa-miR-130b-5p 0 0 1
chr17:760013|760238 hsa-miR-130b-3p 0 0 1
chr17:760013|760238 hsa-miR-488-5p 0 0 1
chr17:760013|760238 hsa-miR-488-3p 0 0 1
chr17:760013|760238 hsa-miR-577 0 0 1
chr17:760013|760238 hsa-miR-599 0 0 1
chr17:760013|760238 hsa-miR-641 0 0 1
chr17:760013|760238 hsa-miR-454-5p 0 0 1
chr17:760013|760238 hsa-miR-454-3p 0 0 1
chr17:760013|760238 hsa-miR-301b-5p 0 0 1
chr17:760013|760238 hsa-miR-301b-3p 0 0 1
chr17:760013|760238 hsa-miR-922 0 1 1
chr17:760013|760238 hsa-miR-1294 0 0 1
chr17:760013|760238 hsa-miR-548n 0 0 1
chr17:760013|760238 hsa-miR-1322 0 0 1
chr17:760013|760238 hsa-miR-140-5p 0 0 1
chr17:760013|760238 hsa-miR-885-3p 1 0 1
chr17:760013|760238 hsa-miR-1225-5p 0 0 1
chr17:760013|760238 hsa-miR-7 0 0 1
chr17:760013|760238 hsa-miR-608 1 0 0
chr17:760013|760238 hsa-miR-623 1 0 0
chr17:760013|760238 hsa-miR-761 0 1 0
chr17:760013|760238 hsa-miR-1293 1 1 0
chr17:760013|760238 hsa-miR-3188 1 1 0
chr17:760013|760238 hsa-miR-3609 0 1 0
chr17:760013|760238 hsa-miR-3714 1 0 0
chr17:760013|760238 hsa-miR-1268b 1 0 0
chr17:760013|760238 hsa-miR-4464 0 1 0
chr17:760013|760238 hsa-miR-4688 1 0 0
chr17:760013|760238 hsa-miR-4739 1 0 0
chr17:760013|760238 hsa-miR-4748 1 1 0
chr17:760013|760238 hsa-miR-4801 0 1 0
chr17:760013|760238 hsa-miR-6086 1 0 0
chr17:760013|760238 hsa-miR-12118 0 1 0
chr17:760013|760238 hsa-miR-150-3p 1 0 0
chr17:760013|760238 hsa-miR-218-1-3p 0 1 0
chr17:760013|760238 hsa-miR-4695-5p 1 1 0
chr17:760013|760238 hsa-miR-593-5p 1 0 0
chr17:760013|760238 hsa-miR-3622b-5p 1 0 0
chr17:760013|760238 hsa-miR-4711-5p 1 0 0
chr17:760013|760238 hsa-miR-95-5p 0 1 0
chr17:760013|760238 hsa-miR-7109-3p 0 1 0
chr17:760013|760238 hsa-miR-1229-5p 1 0 0
chr17:760013|760238 hsa-miR-296-3p 1 0 0
chr17:760013|760238 hsa-miR-6501-3p 0 1 0
chr17:760013|760238 hsa-miR-1207-5p 1 1 0
chr17:760013|760238 hsa-miR-4763-3p 1 0 0
chr17:760013|760238 hsa-miR-6743-5p 1 0 0
chr17:760013|760238 hsa-miR-6754-5p 1 0 0
chr17:760013|760238 hsa-miR-6808-5p 1 1 0
chr17:760013|760238 hsa-miR-10526-3p 1 0 0
chr17:760013|760238 hsa-miR-4632-5p 1 0 0
chr17:760013|760238 hsa-miR-6846-5p 1 1 0
chr17:760013|760238 hsa-miR-6848-5p 1 0 0
chr17:760013|760238 hsa-miR-5586-3p 0 1 0
chr17:760013|760238 hsa-miR-6511b-5p 1 0 0
chr17:760013|760238 hsa-miR-7151-3p 0 1 0
chr17:760013|760238 hsa-miR-4747-5p 1 0 0
chr17:760013|760238 hsa-miR-9851-5p 1 0 0
chr17:760013|760238 hsa-miR-6819-3p 0 1 0
chr17:760013|760238 hsa-miR-548az-5p 0 1 0
chr17:760013|760238 hsa-miR-1912-3p 1 0 0
chr17:760013|760238 hsa-miR-217-3p 0 1 0
chr17:760013|760238 hsa-miR-548t-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:760013|760238
ORF Type ORF1
Protein Length 58
Nucleotide Length 174
Protein Sequence MPVRETNQKSIYWELTRQASQVLGRNHRGLLCIMSSVNLKLWVYCVWQTTRHFYLLPL
Nucleotide Sequence TTGCCTGTACGGGAAACAAATCAGAAGAGCATTTATTGGGAACTGACACGTCAGGCCTCACAGGTGCTGGGCAGGAATCACAGAGGCTTGCTCTGCATCATGTCTTCCGTTAACCTGAAGCTTTGGGTTTATTGTGTTTGGCAAACCACTCGTCACTTTTATCTGCTGCCATTG
CircID chr17:760013|760238
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MKYTNLHYPSLLACTGNKSEEHLLGTDTSGLTGAGQESQRLALHHVFR
Nucleotide Sequence TTGAAATACACAAATCTGCACTACCCAAGCCTCCTTGCCTGTACGGGAAACAAATCAGAAGAGCATTTATTGGGAACTGACACGTCAGGCCTCACAGGTGCTGGGCAGGAATCACAGAGGCTTGCTCTGCATCATGTCTTCCGTTAA
CircID chr17:760013|760238
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MPNTINPKLQVNGRHDAEQASVIPAQHL
Nucleotide Sequence TTGCCAAACACAATAAACCCAAAGCTTCAGGTTAACGGAAGACATGATGCAGAGCAAGCCTCTGTGATTCCTGCCCAGCACCTGTGA
CircID chr17:760013|760238
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MTCQFPINALLICFPYRQGGLGSADLCISIFESSD
Nucleotide Sequence CTGACGTGTCAGTTCCCAATAAATGCTCTTCTGATTTGTTTCCCGTACAGGCAAGGAGGCTTGGGTAGTGCAGATTTGTGTATTTCAATCTTTGAAAGCTCTGAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab