CircRNA Information

General Information
circRNA Basic Information
CircID chr17:7673535|7673742
Strand -
CircType exon
Host Gene ENSG00000141510.14;
Algorism CIRI2;
Sequence CTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:7673535|7673742 hsa-miR-22-5p 0 0 1
chr17:7673535|7673742 hsa-miR-22-3p 0 0 1
chr17:7673535|7673742 hsa-miR-197-5p 0 0 1
chr17:7673535|7673742 hsa-miR-197-3p 0 0 1
chr17:7673535|7673742 hsa-miR-384 0 1 1
chr17:7673535|7673742 hsa-miR-558 0 0 1
chr17:7673535|7673742 hsa-miR-765 0 1 1
chr17:7673535|7673742 hsa-miR-1226-5p 0 0 1
chr17:7673535|7673742 hsa-miR-1226-3p 0 0 1
chr17:7673535|7673742 hsa-miR-1286 0 1 1
chr17:7673535|7673742 hsa-miR-1243 0 0 1
chr17:7673535|7673742 hsa-miR-361-3p 0 0 1
chr17:7673535|7673742 hsa-miR-532-5p 0 0 1
chr17:7673535|7673742 hsa-miR-502-5p 0 0 1
chr17:7673535|7673742 hsa-miR-324-3p 0 0 1
chr17:7673535|7673742 hsa-miR-220b 0 0 1
chr17:7673535|7673742 hsa-miR-638 1 0 0
chr17:7673535|7673742 hsa-miR-4268 0 1 0
chr17:7673535|7673742 hsa-miR-4270 1 1 0
chr17:7673535|7673742 hsa-miR-3943 1 0 0
chr17:7673535|7673742 hsa-miR-4436a 0 1 0
chr17:7673535|7673742 hsa-miR-4689 1 0 0
chr17:7673535|7673742 hsa-miR-4739 1 0 0
chr17:7673535|7673742 hsa-miR-6090 1 0 0
chr17:7673535|7673742 hsa-miR-6165 0 1 0
chr17:7673535|7673742 hsa-miR-103a-2-5p 1 1 0
chr17:7673535|7673742 hsa-miR-143-5p 0 1 0
chr17:7673535|7673742 hsa-miR-6765-5p 1 0 0
chr17:7673535|7673742 hsa-miR-4786-5p 0 1 0
chr17:7673535|7673742 hsa-miR-6880-5p 0 1 0
chr17:7673535|7673742 hsa-miR-7847-3p 0 1 0
chr17:7673535|7673742 hsa-miR-4695-5p 1 0 0
chr17:7673535|7673742 hsa-miR-1915-5p 1 0 0
chr17:7673535|7673742 hsa-miR-6827-5p 0 1 0
chr17:7673535|7673742 hsa-miR-6798-5p 1 0 0
chr17:7673535|7673742 hsa-miR-4753-3p 0 1 0
chr17:7673535|7673742 hsa-miR-6782-5p 1 1 0
chr17:7673535|7673742 hsa-miR-6736-3p 0 1 0
chr17:7673535|7673742 hsa-miR-3162-5p 1 0 0
chr17:7673535|7673742 hsa-miR-2355-5p 0 1 0
chr17:7673535|7673742 hsa-miR-2114-3p 0 1 0
chr17:7673535|7673742 hsa-miR-7113-5p 1 1 0
chr17:7673535|7673742 hsa-miR-6760-3p 1 0 0
chr17:7673535|7673742 hsa-miR-3124-3p 0 1 0
chr17:7673535|7673742 hsa-miR-130b-5p 0 1 0
chr17:7673535|7673742 hsa-miR-6890-3p 0 1 0
chr17:7673535|7673742 hsa-miR-3152-5p 0 1 0
chr17:7673535|7673742 hsa-miR-6726-5p 1 0 0
chr17:7673535|7673742 hsa-miR-6754-5p 1 0 0
chr17:7673535|7673742 hsa-miR-1915-3p 1 1 0
chr17:7673535|7673742 hsa-miR-328-5p 1 0 0
chr17:7673535|7673742 hsa-miR-4685-5p 1 0 0
chr17:7673535|7673742 hsa-miR-6777-5p 1 0 0
chr17:7673535|7673742 hsa-miR-6795-5p 1 0 0
chr17:7673535|7673742 hsa-miR-939-5p 1 0 0
chr17:7673535|7673742 hsa-miR-6750-5p 1 0 0
chr17:7673535|7673742 hsa-miR-2682-3p 1 1 0
chr17:7673535|7673742 hsa-miR-6511b-3p 0 1 0
chr17:7673535|7673742 hsa-miR-3619-5p 1 0 0
chr17:7673535|7673742 hsa-miR-6781-3p 0 1 0
chr17:7673535|7673742 hsa-miR-103a-1-5p 1 1 0
chr17:7673535|7673742 hsa-miR-122b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:7673535|7673742
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence LKGEIFSIQWFLLWLGRGAGVVGQC
Nucleotide Sequence CTGAAGGGTGAAATATTCTCCATCCAGTGGTTTCTTCTTTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAG
CircID chr17:7673535|7673742
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MAGERSWCCWAVLGKRQGKVIKVNLRHNCTLGLLHRFLSCLLTSLSAPWGQLVVRL
Nucleotide Sequence TTGGCTGGGGAGAGGAGCTGGTGTTGTTGGGCAGTGCTAGGAAAGAGGCAAGGAAAGGTGATAAAAGTGAATCTGAGGCATAACTGCACCCTTGGTCTCCTCCACCGCTTCTTGTCCTGCTTGCTTACCTCGCTTAGTGCTCCCTGGGGGCAGCTCGTGGTGAGGCTC
CircID chr17:7673535|7673742
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MPPGSTKRGKQAGQEAVEETKGAVMPQIHFYHLSLPLS
Nucleotide Sequence CTGCCCCCAGGGAGCACTAAGCGAGGTAAGCAAGCAGGACAAGAAGCGGTGGAGGAGACCAAGGGTGCAGTTATGCCTCAGATTCACTTTTATCACCTTTCCTTGCCTCTTTCCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab