CircRNA Information

General Information
circRNA Basic Information
CircID chr17:76902555|76906187
Strand +
CircType exon
Host Gene ENSG00000167889.12;
Algorism find_circ;CIRI2;DCC;
Sequence GATGCCCCCTGGGGCCGGCCTCATGGAGCGGATCCAGGCTATTGCCCAGAACGTCTCCGACATCGCTGTGAAGGTGGACCAGATCCTGCGCCACAGTCTGCTCCTGCACAGCAAGGTGTCAGAAGGCCGGCGGGACCAGTGTGAGGCACCCAGTGACCCCAAGTTCCCTGACTGCTCAGGGAAGGTGGAGTGGATGCGTGCCCGCTGGACCTCTGACCCCTGCTACGCCTTCTTTGGGGTGGACGGCACCGAGTGCTCCTTCCTCATCTACCTCAGTGAGGTCGAGTGGTTCTGCCCCCCGCTGCCCTGGAGGAACCAGACGGCTGCCCAGAGGGCACCCAAGCCCCTCCCCAAAGTCCAGGCAGTTTTCCGAAGCAACCTGTCCCACCTTCTGGACCTGATGGGCAGCGGGAAGGAGTCCCTGATCTTCATGAAGAAGCGGACCAAGAGGCTCACAGCCCAGTGGGCGCTGGCTGCCCAGCGCCTGGCACAGAAGCTGGGGGCCACCCAGAGGGACCAGAAGCAGATCCTGGTCCACATCGGCTTCCTGACGGAGGAGTCCGGGGACGTGTTCAGCCCTCGGGTCCTGAAGGGCGGGCCCCTAGGGGAGATGGTGCAGTGGGCGGACATTCTGACTGCACTCTATGTCCTGGGCCATGGCCTGCGGGTCACAGTCTCCCTGAAGGAGCTGCAGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:76902555|76906187
ORF Type ORF1
Protein Length 231
Nucleotide Length 693
Protein Sequence MPPGAGLMERIQAIAQNVSDIAVKVDQILRHSLLLHSKVSEGRRDQCEAPSDPKFPDCSGKVEWMRARWTSDPCYAFFGVDGTECSFLIYLSEVEWFCPPLPWRNQTAAQRAPKPLPKVQAVFRSNLSHLLDLMGSGKESLIFMKKRTKRLTAQWALAAQRLAQKLGATQRDQKQILVHIGFLTEESGDVFSPRVLKGGPLGEMVQWADILTALYVLGHGLRVTVSLKELQ
Nucleotide Sequence ATGCCCCCTGGGGCCGGCCTCATGGAGCGGATCCAGGCTATTGCCCAGAACGTCTCCGACATCGCTGTGAAGGTGGACCAGATCCTGCGCCACAGTCTGCTCCTGCACAGCAAGGTGTCAGAAGGCCGGCGGGACCAGTGTGAGGCACCCAGTGACCCCAAGTTCCCTGACTGCTCAGGGAAGGTGGAGTGGATGCGTGCCCGCTGGACCTCTGACCCCTGCTACGCCTTCTTTGGGGTGGACGGCACCGAGTGCTCCTTCCTCATCTACCTCAGTGAGGTCGAGTGGTTCTGCCCCCCGCTGCCCTGGAGGAACCAGACGGCTGCCCAGAGGGCACCCAAGCCCCTCCCCAAAGTCCAGGCAGTTTTCCGAAGCAACCTGTCCCACCTTCTGGACCTGATGGGCAGCGGGAAGGAGTCCCTGATCTTCATGAAGAAGCGGACCAAGAGGCTCACAGCCCAGTGGGCGCTGGCTGCCCAGCGCCTGGCACAGAAGCTGGGGGCCACCCAGAGGGACCAGAAGCAGATCCTGGTCCACATCGGCTTCCTGACGGAGGAGTCCGGGGACGTGTTCAGCCCTCGGGTCCTGAAGGGCGGGCCCCTAGGGGAGATGGTGCAGTGGGCGGACATTCTGACTGCACTCTATGTCCTGGGCCATGGCCTGCGGGTCACAGTCTCCCTGAAGGAGCTGCAG
CircID chr17:76902555|76906187
ORF Type ORF2
Protein Length 121
Nucleotide Length 363
Protein Sequence MSAHCTISPRGPPFRTRGLNTSPDSSVRKPMWTRICFWSLWVAPSFCARRWAASAHWAVSLLVRFFMKIRDSFPLPIRSRRWDRLLRKTAWTLGRGLGALWAAVWFLQGSGGQNHSTSLR*
Nucleotide Sequence ATGTCCGCCCACTGCACCATCTCCCCTAGGGGCCCGCCCTTCAGGACCCGAGGGCTGAACACGTCCCCGGACTCCTCCGTCAGGAAGCCGATGTGGACCAGGATCTGCTTCTGGTCCCTCTGGGTGGCCCCCAGCTTCTGTGCCAGGCGCTGGGCAGCCAGCGCCCACTGGGCTGTGAGCCTCTTGGTCCGCTTCTTCATGAAGATCAGGGACTCCTTCCCGCTGCCCATCAGGTCCAGAAGGTGGGACAGGTTGCTTCGGAAAACTGCCTGGACTTTGGGGAGGGGCTTGGGTGCCCTCTGGGCAGCCGTCTGGTTCCTCCAGGGCAGCGGGGGGCAGAACCACTCGACCTCACTGAGGTAG
CircID chr17:76902555|76906187
ORF Type ORF3
Protein Length 137
Nucleotide Length 411
Protein Sequence VVLPPAALEEPDGCPEGTQAPPQSPGSFPKQPVPPSGPDGQREGVPDLHEEADQEAHSPVGAGCPAPGTEAGGHPEGPEADPGPHRLPDGGVRGRVQPSGPEGRAPRGDGAVGGHSDCTLCPGPWPAGHSLPEGAAE
Nucleotide Sequence GTGGTTCTGCCCCCCGCTGCCCTGGAGGAACCAGACGGCTGCCCAGAGGGCACCCAAGCCCCTCCCCAAAGTCCAGGCAGTTTTCCGAAGCAACCTGTCCCACCTTCTGGACCTGATGGGCAGCGGGAAGGAGTCCCTGATCTTCATGAAGAAGCGGACCAAGAGGCTCACAGCCCAGTGGGCGCTGGCTGCCCAGCGCCTGGCACAGAAGCTGGGGGCCACCCAGAGGGACCAGAAGCAGATCCTGGTCCACATCGGCTTCCTGACGGAGGAGTCCGGGGACGTGTTCAGCCCTCGGGTCCTGAAGGGCGGGCCCCTAGGGGAGATGGTGCAGTGGGCGGACATTCTGACTGCACTCTATGTCCTGGGCCATGGCCTGCGGGTCACAGTCTCCCTGAAGGAGCTGCAGAG
CircID chr17:76902555|76906187
ORF Type ORF4
Protein Length 121
Nucleotide Length 363
Protein Sequence VDQDLLLVPLGGPQLLCQALGSQRPLGCEPLGPLLHEDQGLLPAAHQVQKVGQVASENCLDFGEGLGCPLGSRLVPPGQRGAEPLDLTEVDEEGALGAVHPKEGVAGVRGPAGTHPLHLP*
Nucleotide Sequence GTGGACCAGGATCTGCTTCTGGTCCCTCTGGGTGGCCCCCAGCTTCTGTGCCAGGCGCTGGGCAGCCAGCGCCCACTGGGCTGTGAGCCTCTTGGTCCGCTTCTTCATGAAGATCAGGGACTCCTTCCCGCTGCCCATCAGGTCCAGAAGGTGGGACAGGTTGCTTCGGAAAACTGCCTGGACTTTGGGGAGGGGCTTGGGTGCCCTCTGGGCAGCCGTCTGGTTCCTCCAGGGCAGCGGGGGGCAGAACCACTCGACCTCACTGAGGTAGATGAGGAAGGAGCACTCGGTGCCGTCCACCCCAAAGAAGGCGTAGCAGGGGTCAGAGGTCCAGCGGGCACGCATCCACTCCACCTTCCCTGA
CircID chr17:76902555|76906187
ORF Type ORF5
Protein Length 87
Nucleotide Length 261
Protein Sequence VRHPVTPSSLTAQGRWSGCVPAGPLTPATPSLGWTAPSAPSSSTSVRSSGSAPRCPGGTRRLPRGHPSPSPKSRQFSEATCPTFWT*
Nucleotide Sequence GTGAGGCACCCAGTGACCCCAAGTTCCCTGACTGCTCAGGGAAGGTGGAGTGGATGCGTGCCCGCTGGACCTCTGACCCCTGCTACGCCTTCTTTGGGGTGGACGGCACCGAGTGCTCCTTCCTCATCTACCTCAGTGAGGTCGAGTGGTTCTGCCCCCCGCTGCCCTGGAGGAACCAGACGGCTGCCCAGAGGGCACCCAAGCCCCTCCCCAAAGTCCAGGCAGTTTTCCGAAGCAACCTGTCCCACCTTCTGGACCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr17:76902555|76906187 U2AF2 2 1 1
chr17:76902555|76906187 FUS 2 8 2
chr17:76902555|76906187 ELAVL3 0 1 0
chr17:76902555|76906187 TAF15 0 2 0
chr17:76902555|76906187 FMR1 0 0 1
chr17:76902555|76906187 NOP58 0 1 1
chr17:76902555|76906187 ADAR 0 1 0
chr17:76902555|76906187 KHSRP 0 1 0
chr17:76902555|76906187 DDX54 0 0 1
chr17:76902555|76906187 HNRNPM 0 1 0
chr17:76902555|76906187 PTBP1 0 1 0
chr17:76902555|76906187 HNRNPC 0 1 0
chr17:76902555|76906187 RANGAP1 0 1 0
chr17:76902555|76906187 LIN28A 0 1 0
chr17:76902555|76906187 IGF2BP2 0 1 4
chr17:76902555|76906187 TARDBP 0 4 0
chr17:76902555|76906187 RBFOX2 0 1 0
chr17:76902555|76906187 CSTF2T 0 1 0
chr17:76902555|76906187 AGO2 0 3 2
chr17:76902555|76906187 EWSR1 0 1 0
chr17:76902555|76906187 EIF4A3 0 6 10
chr17:76902555|76906187 FBL 1 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab