CircRNA Information

General Information
circRNA Basic Information
CircID chr17:77216610|77216804
Strand +
CircType exon
Host Gene ENSG00000129657.13;
Algorism CIRI2;
Sequence AAGGGGAGTGAGATTGGATTACTCGGGAGGAAACCCTGTAAGCATTTGTGCGGTCATGTGCTTTGAGCTCTTCAAGATGCACTACAGTCTTTGGGTATAAAAGAATGCCACTCCCGAATCAACTTAAAAAGAACAGATCTTCAGCCTGGGAGGGGGCAGGGGATGGCTGCAATTCAAACAGTTCTATAAACATCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:77216610|77216804 hsa-miR-216a-5p 0 0 1
chr17:77216610|77216804 hsa-miR-216a-3p 0 0 1
chr17:77216610|77216804 hsa-miR-130a-5p 0 0 1
chr17:77216610|77216804 hsa-miR-130a-3p 0 0 1
chr17:77216610|77216804 hsa-miR-301a-5p 0 0 1
chr17:77216610|77216804 hsa-miR-301a-3p 0 0 1
chr17:77216610|77216804 hsa-miR-130b-5p 0 0 1
chr17:77216610|77216804 hsa-miR-130b-3p 0 0 1
chr17:77216610|77216804 hsa-miR-382-5p 0 0 1
chr17:77216610|77216804 hsa-miR-382-3p 0 0 1
chr17:77216610|77216804 hsa-miR-452-5p 0 0 1
chr17:77216610|77216804 hsa-miR-452-3p 0 0 1
chr17:77216610|77216804 hsa-miR-600 0 0 1
chr17:77216610|77216804 hsa-miR-1301-5p 0 0 1
chr17:77216610|77216804 hsa-miR-1301-3p 0 0 1
chr17:77216610|77216804 hsa-miR-454-5p 0 0 1
chr17:77216610|77216804 hsa-miR-454-3p 0 0 1
chr17:77216610|77216804 hsa-miR-301b-5p 0 0 1
chr17:77216610|77216804 hsa-miR-301b-3p 0 0 1
chr17:77216610|77216804 hsa-miR-1183 0 1 1
chr17:77216610|77216804 hsa-miR-1238-5p 0 0 1
chr17:77216610|77216804 hsa-miR-1238-3p 0 0 1
chr17:77216610|77216804 hsa-miR-1256 0 0 1
chr17:77216610|77216804 hsa-miR-330-3p 1 1 1
chr17:77216610|77216804 hsa-miR-331-3p 0 0 1
chr17:77216610|77216804 hsa-miR-324-3p 0 0 1
chr17:77216610|77216804 hsa-miR-483-3p 0 0 1
chr17:77216610|77216804 hsa-miR-142-3p 0 0 1
chr17:77216610|77216804 hsa-miR-105 0 0 1
chr17:77216610|77216804 hsa-miR-219-2-3p 0 0 1
chr17:77216610|77216804 hsa-miR-1913 1 1 0
chr17:77216610|77216804 hsa-miR-3139 0 1 0
chr17:77216610|77216804 hsa-miR-3652 1 0 0
chr17:77216610|77216804 hsa-miR-4511 1 0 0
chr17:77216610|77216804 hsa-miR-4643 0 1 0
chr17:77216610|77216804 hsa-miR-6083 0 1 0
chr17:77216610|77216804 hsa-miR-6840-3p 1 0 0
chr17:77216610|77216804 hsa-miR-4700-3p 1 0 0
chr17:77216610|77216804 hsa-miR-1915-5p 1 0 0
chr17:77216610|77216804 hsa-miR-3156-5p 1 0 0
chr17:77216610|77216804 hsa-miR-6858-3p 1 0 0
chr17:77216610|77216804 hsa-miR-7113-3p 1 0 0
chr17:77216610|77216804 hsa-miR-6771-5p 0 1 0
chr17:77216610|77216804 hsa-miR-7111-3p 1 0 0
chr17:77216610|77216804 hsa-miR-4787-5p 1 0 0
chr17:77216610|77216804 hsa-miR-5196-3p 1 1 0
chr17:77216610|77216804 hsa-miR-6752-3p 1 1 0
chr17:77216610|77216804 hsa-miR-28-5p 0 1 0
chr17:77216610|77216804 hsa-miR-5589-3p 0 1 0
chr17:77216610|77216804 hsa-miR-3670 0 1 0
chr17:77216610|77216804 hsa-miR-6729-3p 1 1 0
chr17:77216610|77216804 hsa-miR-186-3p 0 1 0
chr17:77216610|77216804 hsa-miR-6801-3p 0 1 0
chr17:77216610|77216804 hsa-miR-6810-3p 1 1 0
chr17:77216610|77216804 hsa-miR-6829-3p 1 0 0
chr17:77216610|77216804 hsa-miR-7161-5p 0 1 0
chr17:77216610|77216804 hsa-miR-1912-3p 0 1 0
chr17:77216610|77216804 hsa-miR-508-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:77216610|77216804
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MGIKECHSRINLKRTDLQPGRGQGMAAIQTVL
Nucleotide Sequence TTGGGTATAAAAGAATGCCACTCCCGAATCAACTTAAAAAGAACAGATCTTCAGCCTGGGAGGGGGCAGGGGATGGCTGCAATTCAAACAGTTCTATAA
CircID chr17:77216610|77216804
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MDYSGGNPVSICAVMCFELFKMHYSLWV
Nucleotide Sequence TTGGATTACTCGGGAGGAAACCCTGTAAGCATTTGTGCGGTCATGTGCTTTGAGCTCTTCAAGATGCACTACAGTCTTTGGGTATAA
CircID chr17:77216610|77216804
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MSSSRCTTVFGYKRMPLPNQLKKNRSSAWEGAGDGCNSNSSINI
Nucleotide Sequence TTGAGCTCTTCAAGATGCACTACAGTCTTTGGGTATAAAAGAATGCCACTCCCGAATCAACTTAAAAAGAACAGATCTTCAGCCTGGGAGGGGGCAGGGGATGGCTGCAATTCAAACAGTTCTATAAACATC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab