CircRNA Information

General Information
circRNA Basic Information
CircID chr17:78171903|78172126
Strand -
CircType exon
Host Gene ENSG00000108639.6;
Algorism CIRI2;
Sequence CACCGAGGGCTACCAGCCGCCCCCTGTGTACTGAGCGGCGGTTAGCGTGGGAAGGGGGACAGAGAGGGCCCTCCCCTCTGCCCTGGACTTTCCCATGAGCCTCCTGGAACTGCCAGCCCCTCTCTTTCACCTGTTCCATCCTGTGCAGCTGACACACAGCTAAGGAGCCTCATAGCCTGGCGGGGGCTGGCAGAGCCACACCCCAAGTGCCTGTGCCCAGAGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:78171903|78172126 hsa-miR-34a-5p 0 0 1
chr17:78171903|78172126 hsa-miR-34a-3p 0 0 1
chr17:78171903|78172126 hsa-miR-326 0 0 1
chr17:78171903|78172126 hsa-miR-449a 0 0 1
chr17:78171903|78172126 hsa-miR-552-5p 0 0 1
chr17:78171903|78172126 hsa-miR-552-3p 0 0 1
chr17:78171903|78172126 hsa-miR-592 0 1 1
chr17:78171903|78172126 hsa-miR-597-5p 0 0 1
chr17:78171903|78172126 hsa-miR-597-3p 0 0 1
chr17:78171903|78172126 hsa-miR-608 0 0 1
chr17:78171903|78172126 hsa-miR-612 1 1 1
chr17:78171903|78172126 hsa-miR-662 0 0 1
chr17:78171903|78172126 hsa-miR-449b-5p 0 0 1
chr17:78171903|78172126 hsa-miR-449b-3p 0 0 1
chr17:78171903|78172126 hsa-miR-665 1 1 1
chr17:78171903|78172126 hsa-miR-760 0 0 1
chr17:78171903|78172126 hsa-miR-1202 0 1 1
chr17:78171903|78172126 hsa-miR-125a-3p 0 0 1
chr17:78171903|78172126 hsa-miR-485-5p 0 0 1
chr17:78171903|78172126 hsa-miR-423-5p 0 0 1
chr17:78171903|78172126 hsa-miR-1207-3p 0 0 1
chr17:78171903|78172126 hsa-miR-188-3p 0 0 1
chr17:78171903|78172126 hsa-miR-342-5p 0 0 1
chr17:78171903|78172126 hsa-miR-330-5p 0 1 1
chr17:78171903|78172126 hsa-miR-34c-5p 0 0 1
chr17:78171903|78172126 hsa-miR-1260 0 0 1
chr17:78171903|78172126 hsa-miR-220c 0 0 1
chr17:78171903|78172126 hsa-miR-1308 0 0 1
chr17:78171903|78172126 hsa-miR-644 0 0 1
chr17:78171903|78172126 hsa-miR-1285 0 0 1
chr17:78171903|78172126 hsa-miR-129-3p 0 0 1
chr17:78171903|78172126 hsa-miR-602 1 0 0
chr17:78171903|78172126 hsa-miR-637 1 0 0
chr17:78171903|78172126 hsa-miR-644a 0 1 0
chr17:78171903|78172126 hsa-miR-3196 1 1 0
chr17:78171903|78172126 hsa-miR-4298 0 1 0
chr17:78171903|78172126 hsa-miR-4269 1 0 0
chr17:78171903|78172126 hsa-miR-4498 0 1 0
chr17:78171903|78172126 hsa-miR-2392 0 1 0
chr17:78171903|78172126 hsa-miR-3972 0 1 0
chr17:78171903|78172126 hsa-miR-4739 1 0 0
chr17:78171903|78172126 hsa-miR-5572 0 1 0
chr17:78171903|78172126 hsa-miR-6085 0 1 0
chr17:78171903|78172126 hsa-miR-6860 0 1 0
chr17:78171903|78172126 hsa-miR-7974 0 1 0
chr17:78171903|78172126 hsa-miR-8089 1 1 0
chr17:78171903|78172126 hsa-miR-9899 1 0 0
chr17:78171903|78172126 hsa-miR-12127 1 0 0
chr17:78171903|78172126 hsa-miR-150-3p 1 0 0
chr17:78171903|78172126 hsa-miR-3194-3p 0 1 0
chr17:78171903|78172126 hsa-miR-6747-5p 0 1 0
chr17:78171903|78172126 hsa-miR-6861-5p 1 0 0
chr17:78171903|78172126 hsa-miR-6894-5p 1 0 0
chr17:78171903|78172126 hsa-miR-6892-3p 0 1 0
chr17:78171903|78172126 hsa-miR-6728-5p 1 0 0
chr17:78171903|78172126 hsa-miR-4695-5p 0 1 0
chr17:78171903|78172126 hsa-miR-4755-3p 0 1 0
chr17:78171903|78172126 hsa-miR-6873-3p 0 1 0
chr17:78171903|78172126 hsa-miR-6817-3p 0 1 0
chr17:78171903|78172126 hsa-miR-6768-5p 1 0 0
chr17:78171903|78172126 hsa-miR-185-3p 0 1 0
chr17:78171903|78172126 hsa-miR-6732-5p 1 0 0
chr17:78171903|78172126 hsa-miR-6805-5p 1 1 0
chr17:78171903|78172126 hsa-miR-2467-5p 0 1 0
chr17:78171903|78172126 hsa-miR-6798-5p 0 1 0
chr17:78171903|78172126 hsa-miR-2467-3p 0 1 0
chr17:78171903|78172126 hsa-miR-4793-3p 1 0 0
chr17:78171903|78172126 hsa-miR-3194-5p 0 1 0
chr17:78171903|78172126 hsa-miR-5088-5p 1 0 0
chr17:78171903|78172126 hsa-miR-6753-5p 0 1 0
chr17:78171903|78172126 hsa-miR-4717-3p 1 0 0
chr17:78171903|78172126 hsa-miR-7111-3p 0 1 0
chr17:78171903|78172126 hsa-miR-4787-5p 1 0 0
chr17:78171903|78172126 hsa-miR-4638-3p 1 0 0
chr17:78171903|78172126 hsa-miR-4446-3p 0 1 0
chr17:78171903|78172126 hsa-miR-6800-5p 0 1 0
chr17:78171903|78172126 hsa-miR-7160-3p 0 1 0
chr17:78171903|78172126 hsa-miR-1225-5p 1 0 0
chr17:78171903|78172126 hsa-miR-584-3p 0 1 0
chr17:78171903|78172126 hsa-miR-328-3p 0 1 0
chr17:78171903|78172126 hsa-miR-6851-3p 0 1 0
chr17:78171903|78172126 hsa-miR-6734-3p 0 1 0
chr17:78171903|78172126 hsa-miR-6847-3p 0 1 0
chr17:78171903|78172126 hsa-miR-4727-5p 0 1 0
chr17:78171903|78172126 hsa-miR-4763-3p 1 0 0
chr17:78171903|78172126 hsa-miR-6816-5p 0 1 0
chr17:78171903|78172126 hsa-miR-6775-5p 1 1 0
chr17:78171903|78172126 hsa-miR-6737-5p 1 1 0
chr17:78171903|78172126 hsa-miR-6752-5p 1 0 0
chr17:78171903|78172126 hsa-miR-6813-5p 0 1 0
chr17:78171903|78172126 hsa-miR-6842-5p 1 1 0
chr17:78171903|78172126 hsa-miR-6722-3p 1 1 0
chr17:78171903|78172126 hsa-miR-6797-5p 1 0 0
chr17:78171903|78172126 hsa-miR-6879-5p 0 1 0
chr17:78171903|78172126 hsa-miR-3127-3p 0 1 0
chr17:78171903|78172126 hsa-miR-320a-5p 0 1 0
chr17:78171903|78172126 hsa-miR-4685-3p 0 1 0
chr17:78171903|78172126 hsa-miR-5189-5p 1 1 0
chr17:78171903|78172126 hsa-miR-5196-5p 1 0 0
chr17:78171903|78172126 hsa-miR-6780b-5p 1 0 0
chr17:78171903|78172126 hsa-miR-328-5p 1 0 0
chr17:78171903|78172126 hsa-miR-4632-5p 0 1 0
chr17:78171903|78172126 hsa-miR-4649-5p 0 1 0
chr17:78171903|78172126 hsa-miR-4685-5p 0 1 0
chr17:78171903|78172126 hsa-miR-6735-5p 0 1 0
chr17:78171903|78172126 hsa-miR-6846-5p 1 0 0
chr17:78171903|78172126 hsa-miR-6848-5p 1 1 0
chr17:78171903|78172126 hsa-miR-4436b-3p 0 1 0
chr17:78171903|78172126 hsa-miR-6731-5p 1 0 0
chr17:78171903|78172126 hsa-miR-6758-5p 0 1 0
chr17:78171903|78172126 hsa-miR-6856-5p 0 1 0
chr17:78171903|78172126 hsa-miR-7843-5p 0 1 0
chr17:78171903|78172126 hsa-miR-7151-3p 1 0 0
chr17:78171903|78172126 hsa-miR-1185-1-3p 0 1 0
chr17:78171903|78172126 hsa-miR-1185-2-3p 0 1 0
chr17:78171903|78172126 hsa-miR-9851-5p 0 1 0
chr17:78171903|78172126 hsa-miR-6756-3p 0 1 0
chr17:78171903|78172126 hsa-miR-6805-3p 0 1 0
chr17:78171903|78172126 hsa-miR-6837-5p 0 1 0
chr17:78171903|78172126 hsa-miR-4723-3p 0 1 0
chr17:78171903|78172126 hsa-miR-6769b-3p 0 1 0
chr17:78171903|78172126 hsa-miR-4756-5p 0 1 0
chr17:78171903|78172126 hsa-miR-6715b-5p 1 1 0
chr17:78171903|78172126 hsa-miR-6733-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:78171903|78172126
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MDFPMSLLELPAPLFHLFHPVQLTHS
Nucleotide Sequence CTGGACTTTCCCATGAGCCTCCTGGAACTGCCAGCCCCTCTCTTTCACCTGTTCCATCCTGTGCAGCTGACACACAGCTAA
CircID chr17:78171903|78172126
ORF Type ORF2
Protein Length 54
Nucleotide Length 165
Protein Sequence MGCGSASPRQAMRLLSCVSAAQDGTGEREGLAVPGGSWESPGQRGGPSLSPFPR
Nucleotide Sequence TTGGGGTGTGGCTCTGCCAGCCCCCGCCAGGCTATGAGGCTCCTTAGCTGTGTGTCAGCTGCACAGGATGGAACAGGTGAAAGAGAGGGGCTGGCAGTTCCAGGAGGCTCATGGGAAAGTCCAGGGCAGAGGGGAGGGCCCTCTCTGTCCCCCTTCCCACGCTAA
CircID chr17:78171903|78172126
ORF Type ORF3
Protein Length 49
Nucleotide Length 147
Protein Sequence MHRMEQVKERGWQFQEAHGKVQGRGEGPLCPPSHANRRSVHRGRLVALG
Nucleotide Sequence CTGCACAGGATGGAACAGGTGAAAGAGAGGGGCTGGCAGTTCCAGGAGGCTCATGGGAAAGTCCAGGGCAGAGGGGAGGGCCCTCTCTGTCCCCCTTCCCACGCTAACCGCCGCTCAGTACACAGGGGGCGGCTGGTAGCCCTCGGT
CircID chr17:78171903|78172126
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MGKSRAEGRALSVPLPTLTAAQYTGGGW
Nucleotide Sequence ATGGGAAAGTCCAGGGCAGAGGGGAGGGCCCTCTCTGTCCCCCTTCCCACGCTAACCGCCGCTCAGTACACAGGGGGCGGCTGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab