CircRNA Information

General Information
circRNA Basic Information
CircID chr17:78674264|78674459
Strand -
CircType exon
Host Gene ENSG00000108669.15;
Algorism CIRI2;
Sequence CTCTGATAAATAGACTAATACTGACCCAGGTGCCTCTCTGTCTAGGAAACACTTGAGAACCAGGCCAGGGCCCGGGCCAGCTGGACAGGCTCCAGCACCGGCCCAAACACGCCCAGACCTCGGCAGGCACCACCTGGTTCTCCCACCCAGAAAGTTCAGGTTTCCAGCCTGGACCCTCTTCTGTCACCCTCACAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:78674264|78674459 hsa-miR-198 0 0 1
chr17:78674264|78674459 hsa-miR-384 0 0 1
chr17:78674264|78674459 hsa-miR-585-5p 0 0 1
chr17:78674264|78674459 hsa-miR-585-3p 0 0 1
chr17:78674264|78674459 hsa-miR-589-5p 0 0 1
chr17:78674264|78674459 hsa-miR-589-3p 0 0 1
chr17:78674264|78674459 hsa-miR-612 0 0 1
chr17:78674264|78674459 hsa-miR-1287-5p 0 0 1
chr17:78674264|78674459 hsa-miR-1287-3p 0 0 1
chr17:78674264|78674459 hsa-miR-1291 0 0 1
chr17:78674264|78674459 hsa-miR-1293 0 0 1
chr17:78674264|78674459 hsa-miR-1294 0 0 1
chr17:78674264|78674459 hsa-miR-1250-5p 0 0 1
chr17:78674264|78674459 hsa-miR-1250-3p 0 0 1
chr17:78674264|78674459 hsa-miR-513c-5p 0 0 1
chr17:78674264|78674459 hsa-miR-513c-3p 0 0 1
chr17:78674264|78674459 hsa-miR-361-5p 0 0 1
chr17:78674264|78674459 hsa-miR-1207-3p 0 1 1
chr17:78674264|78674459 hsa-miR-875-3p 0 1 1
chr17:78674264|78674459 hsa-miR-542-3p 0 0 1
chr17:78674264|78674459 hsa-miR-550 0 0 1
chr17:78674264|78674459 hsa-miR-1285 0 0 1
chr17:78674264|78674459 hsa-miR-1268 0 0 1
chr17:78674264|78674459 hsa-miR-661 1 1 0
chr17:78674264|78674459 hsa-miR-762 1 1 0
chr17:78674264|78674459 hsa-miR-921 1 0 0
chr17:78674264|78674459 hsa-miR-1538 0 1 0
chr17:78674264|78674459 hsa-miR-3138 1 0 0
chr17:78674264|78674459 hsa-miR-3176 0 1 0
chr17:78674264|78674459 hsa-miR-3652 0 1 0
chr17:78674264|78674459 hsa-miR-1268b 0 1 0
chr17:78674264|78674459 hsa-miR-3135b 0 1 0
chr17:78674264|78674459 hsa-miR-4462 1 0 0
chr17:78674264|78674459 hsa-miR-4486 0 1 0
chr17:78674264|78674459 hsa-miR-4651 1 0 0
chr17:78674264|78674459 hsa-miR-12113 0 1 0
chr17:78674264|78674459 hsa-miR-12119 1 0 0
chr17:78674264|78674459 hsa-miR-214-5p 0 1 0
chr17:78674264|78674459 hsa-miR-6804-5p 0 1 0
chr17:78674264|78674459 hsa-miR-6746-5p 0 1 0
chr17:78674264|78674459 hsa-miR-7160-5p 1 1 0
chr17:78674264|78674459 hsa-miR-6759-5p 1 0 0
chr17:78674264|78674459 hsa-miR-874-3p 1 0 0
chr17:78674264|78674459 hsa-miR-6776-5p 1 0 0
chr17:78674264|78674459 hsa-miR-3151-5p 1 0 0
chr17:78674264|78674459 hsa-miR-6772-5p 1 0 0
chr17:78674264|78674459 hsa-miR-6796-5p 1 0 0
chr17:78674264|78674459 hsa-miR-6732-5p 1 1 0
chr17:78674264|78674459 hsa-miR-6827-5p 1 0 0
chr17:78674264|78674459 hsa-miR-6740-5p 0 1 0
chr17:78674264|78674459 hsa-miR-4783-3p 0 1 0
chr17:78674264|78674459 hsa-miR-30c-2-3p 0 1 0
chr17:78674264|78674459 hsa-miR-149-3p 1 0 0
chr17:78674264|78674459 hsa-miR-7152-3p 1 0 0
chr17:78674264|78674459 hsa-miR-597-3p 0 1 0
chr17:78674264|78674459 hsa-miR-6748-3p 0 1 0
chr17:78674264|78674459 hsa-miR-500a-3p 0 1 0
chr17:78674264|78674459 hsa-miR-1233-5p 0 1 0
chr17:78674264|78674459 hsa-miR-6778-5p 0 1 0
chr17:78674264|78674459 hsa-miR-6865-5p 1 0 0
chr17:78674264|78674459 hsa-miR-6756-5p 1 1 0
chr17:78674264|78674459 hsa-miR-6803-5p 1 0 0
chr17:78674264|78674459 hsa-miR-6722-3p 1 0 0
chr17:78674264|78674459 hsa-miR-6751-5p 1 0 0
chr17:78674264|78674459 hsa-miR-6774-5p 0 1 0
chr17:78674264|78674459 hsa-miR-6780a-5p 1 0 0
chr17:78674264|78674459 hsa-miR-6788-5p 0 1 0
chr17:78674264|78674459 hsa-miR-3620-5p 1 0 0
chr17:78674264|78674459 hsa-miR-328-5p 1 0 0
chr17:78674264|78674459 hsa-miR-6795-5p 1 0 0
chr17:78674264|78674459 hsa-miR-3085-5p 1 0 0
chr17:78674264|78674459 hsa-miR-6856-5p 0 1 0
chr17:78674264|78674459 hsa-miR-1271-3p 0 1 0
chr17:78674264|78674459 hsa-miR-6766-5p 0 1 0
chr17:78674264|78674459 hsa-miR-550a-5p 0 1 0
chr17:78674264|78674459 hsa-miR-6775-3p 0 1 0
chr17:78674264|78674459 hsa-miR-514b-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:78674264|78674459
ORF Type ORF1
Protein Length 53
Nucleotide Length 159
Protein Sequence MSRKHLRTRPGPGPAGQAPAPAQTRPDLGRHHLVLPPRKFRFPAWTLFCHPHK
Nucleotide Sequence CTGTCTAGGAAACACTTGAGAACCAGGCCAGGGCCCGGGCCAGCTGGACAGGCTCCAGCACCGGCCCAAACACGCCCAGACCTCGGCAGGCACCACCTGGTTCTCCCACCCAGAAAGTTCAGGTTTCCAGCCTGGACCCTCTTCTGTCACCCTCACAAG
CircID chr17:78674264|78674459
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MDRLQHRPKHAQTSAGTTWFSHPESSGFQPGPSSVTLT
Nucleotide Sequence CTGGACAGGCTCCAGCACCGGCCCAAACACGCCCAGACCTCGGCAGGCACCACCTGGTTCTCCCACCCAGAAAGTTCAGGTTTCCAGCCTGGACCCTCTTCTGTCACCCTCACA
CircID chr17:78674264|78674459
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MGRCWSLSSWPGPWPGSQVFPRQRGTWVSISLFIR
Nucleotide Sequence TTGGGCCGGTGCTGGAGCCTGTCCAGCTGGCCCGGGCCCTGGCCTGGTTCTCAAGTGTTTCCTAGACAGAGAGGCACCTGGGTCAGTATTAGTCTATTTATCAGA
CircID chr17:78674264|78674459
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MNFLGGRTRWCLPRSGRVWAGAGACPAGPGPGLVLKCFLDREAPGSVLVYLSE
Nucleotide Sequence CTGAACTTTCTGGGTGGGAGAACCAGGTGGTGCCTGCCGAGGTCTGGGCGTGTTTGGGCCGGTGCTGGAGCCTGTCCAGCTGGCCCGGGCCCTGGCCTGGTTCTCAAGTGTTTCCTAGACAGAGAGGCACCTGGGTCAGTATTAGTCTATTTATCAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab