CircRNA Information

General Information
circRNA Basic Information
CircID chr17:78682463|78682634
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCAGCACTCTCCATTCCAGAGCACTCTTCCCTCCTCTCTTGAAACAAGAGGTTTCAAGATCTCTGGTTTCCTACAGCCAAGGCCTTTGTCCTCCACCAGCATCCTGAGAAAGGGTGTGTGGGTGGTAACATTTCTGAAATCTCACTTGGCTAAGAATGTTTCTATTGGACC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:78682463|78682634 hsa-miR-185-5p 0 0 1
chr17:78682463|78682634 hsa-miR-185-3p 0 0 1
chr17:78682463|78682634 hsa-miR-206 0 0 1
chr17:78682463|78682634 hsa-miR-335-5p 0 0 1
chr17:78682463|78682634 hsa-miR-335-3p 0 0 1
chr17:78682463|78682634 hsa-miR-494-5p 0 0 1
chr17:78682463|78682634 hsa-miR-494-3p 0 0 1
chr17:78682463|78682634 hsa-miR-498-5p 0 0 1
chr17:78682463|78682634 hsa-miR-498-3p 0 0 1
chr17:78682463|78682634 hsa-miR-613 0 0 1
chr17:78682463|78682634 hsa-miR-647 0 0 1
chr17:78682463|78682634 hsa-miR-765 1 0 1
chr17:78682463|78682634 hsa-miR-543 0 0 1
chr17:78682463|78682634 hsa-miR-1299 0 1 1
chr17:78682463|78682634 hsa-miR-1266-5p 0 0 1
chr17:78682463|78682634 hsa-miR-1266-3p 0 0 1
chr17:78682463|78682634 hsa-miR-512-3p 0 0 1
chr17:78682463|78682634 hsa-miR-875-3p 0 0 1
chr17:78682463|78682634 hsa-miR-362-3p 0 1 1
chr17:78682463|78682634 hsa-miR-138 0 0 1
chr17:78682463|78682634 hsa-miR-1 0 0 1
chr17:78682463|78682634 hsa-miR-329 0 0 1
chr17:78682463|78682634 hsa-miR-658 1 0 0
chr17:78682463|78682634 hsa-miR-760 1 0 0
chr17:78682463|78682634 hsa-miR-1293 1 0 0
chr17:78682463|78682634 hsa-miR-4518 1 0 0
chr17:78682463|78682634 hsa-miR-4706 1 0 0
chr17:78682463|78682634 hsa-miR-4739 1 1 0
chr17:78682463|78682634 hsa-miR-4779 1 1 0
chr17:78682463|78682634 hsa-miR-6127 1 0 0
chr17:78682463|78682634 hsa-miR-6128 0 1 0
chr17:78682463|78682634 hsa-miR-6129 1 0 0
chr17:78682463|78682634 hsa-miR-6133 1 0 0
chr17:78682463|78682634 hsa-miR-6745 1 0 0
chr17:78682463|78682634 hsa-miR-8065 0 1 0
chr17:78682463|78682634 hsa-miR-138-5p 0 1 0
chr17:78682463|78682634 hsa-miR-4433b-3p 1 0 0
chr17:78682463|78682634 hsa-miR-6734-5p 1 0 0
chr17:78682463|78682634 hsa-miR-4433a-3p 1 0 0
chr17:78682463|78682634 hsa-miR-212-5p 0 1 0
chr17:78682463|78682634 hsa-miR-7106-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6825-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6894-5p 1 1 0
chr17:78682463|78682634 hsa-miR-125a-3p 0 1 0
chr17:78682463|78682634 hsa-miR-6799-5p 1 0 0
chr17:78682463|78682634 hsa-miR-5187-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6880-5p 1 1 0
chr17:78682463|78682634 hsa-miR-7847-3p 0 1 0
chr17:78682463|78682634 hsa-miR-769-5p 0 1 0
chr17:78682463|78682634 hsa-miR-7154-3p 0 1 0
chr17:78682463|78682634 hsa-miR-6741-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6721-5p 1 0 0
chr17:78682463|78682634 hsa-miR-197-5p 1 0 0
chr17:78682463|78682634 hsa-miR-1292-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6760-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6782-5p 1 0 0
chr17:78682463|78682634 hsa-miR-7109-5p 1 0 0
chr17:78682463|78682634 hsa-miR-7161-3p 0 1 0
chr17:78682463|78682634 hsa-miR-4756-3p 0 1 0
chr17:78682463|78682634 hsa-miR-149-3p 1 1 0
chr17:78682463|78682634 hsa-miR-518c-5p 0 1 0
chr17:78682463|78682634 hsa-miR-2116-5p 0 1 0
chr17:78682463|78682634 hsa-miR-1207-5p 1 0 0
chr17:78682463|78682634 hsa-miR-1343-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6754-5p 1 0 0
chr17:78682463|78682634 hsa-miR-1249-5p 1 1 0
chr17:78682463|78682634 hsa-miR-6779-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6780a-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6797-5p 1 1 0
chr17:78682463|78682634 hsa-miR-6879-5p 1 0 0
chr17:78682463|78682634 hsa-miR-4728-5p 1 0 0
chr17:78682463|78682634 hsa-miR-5196-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6780b-5p 1 0 0
chr17:78682463|78682634 hsa-miR-328-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6735-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6795-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6858-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6883-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6887-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6758-5p 1 1 0
chr17:78682463|78682634 hsa-miR-6856-5p 1 1 0
chr17:78682463|78682634 hsa-miR-4747-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6891-5p 1 0 0
chr17:78682463|78682634 hsa-miR-4716-3p 1 0 0
chr17:78682463|78682634 hsa-miR-6750-5p 1 0 0
chr17:78682463|78682634 hsa-miR-6785-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:78682463|78682634
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MSSTSILRKGVWVVTFLKSHLAKNVSIG
Nucleotide Sequence TTGTCCTCCACCAGCATCCTGAGAAAGGGTGTGTGGGTGGTAACATTTCTGAAATCTCACTTGGCTAAGAATGTTTCTATTGGA
CircID chr17:78682463|78682634
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MLVEDKGLGCRKPEILKPLVSREEGRVLWNGEC
Nucleotide Sequence ATGCTGGTGGAGGACAAAGGCCTTGGCTGTAGGAAACCAGAGATCTTGAAACCTCTTGTTTCAAGAGAGGAGGGAAGAGTGCTCTGGAATGGAGAGTGCTGA
CircID chr17:78682463|78682634
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MLPPTHPFSGCWWRTKALAVGNQRS
Nucleotide Sequence ATGTTACCACCCACACACCCTTTCTCAGGATGCTGGTGGAGGACAAAGGCCTTGGCTGTAGGAAACCAGAGATCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab