CircRNA Information

General Information
circRNA Basic Information
CircID chr17:78853967|78854117
Strand -
CircType exon
Host Gene ENSG00000035862.11;
Algorism CIRI2;
Sequence GCCCGTGGGGCAGGGGCCGATTCCTGGATACCCTCCCAGTCTGCCCTAGAAAGGGAAGTCATCAAGATCTGTGCTGACCAGGTCCCGGTGGGCATGGGGGCTGCATGCCACTTGGGGGTCAGGAGTCTTAACAGGTGCTTTGGGGTTGCCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:78853967|78854117 hsa-miR-208a-5p 0 0 1
chr17:78853967|78854117 hsa-miR-208a-3p 0 0 1
chr17:78853967|78854117 hsa-miR-204-5p 0 0 1
chr17:78853967|78854117 hsa-miR-204-3p 0 0 1
chr17:78853967|78854117 hsa-miR-211-5p 0 0 1
chr17:78853967|78854117 hsa-miR-211-3p 0 0 1
chr17:78853967|78854117 hsa-miR-492 0 1 1
chr17:78853967|78854117 hsa-miR-617 0 1 1
chr17:78853967|78854117 hsa-miR-623 0 0 1
chr17:78853967|78854117 hsa-miR-631 0 0 1
chr17:78853967|78854117 hsa-miR-665 0 0 1
chr17:78853967|78854117 hsa-miR-208b-5p 0 0 1
chr17:78853967|78854117 hsa-miR-208b-3p 0 0 1
chr17:78853967|78854117 hsa-miR-330-3p 0 0 1
chr17:78853967|78854117 hsa-miR-324-3p 0 0 1
chr17:78853967|78854117 hsa-miR-1280 0 0 1
chr17:78853967|78854117 hsa-miR-499-5p 0 0 1
chr17:78853967|78854117 hsa-miR-608 1 0 0
chr17:78853967|78854117 hsa-miR-637 1 0 0
chr17:78853967|78854117 hsa-miR-2861 1 0 0
chr17:78853967|78854117 hsa-miR-3661 0 1 0
chr17:78853967|78854117 hsa-miR-3943 0 1 0
chr17:78853967|78854117 hsa-miR-4463 1 1 0
chr17:78853967|78854117 hsa-miR-4494 0 1 0
chr17:78853967|78854117 hsa-miR-4515 1 0 0
chr17:78853967|78854117 hsa-miR-4739 1 0 0
chr17:78853967|78854117 hsa-miR-5090 1 0 0
chr17:78853967|78854117 hsa-miR-671-5p 1 0 0
chr17:78853967|78854117 hsa-miR-210-5p 0 1 0
chr17:78853967|78854117 hsa-miR-1225-3p 1 0 0
chr17:78853967|78854117 hsa-miR-3192-5p 0 1 0
chr17:78853967|78854117 hsa-miR-6765-3p 1 0 0
chr17:78853967|78854117 hsa-miR-6772-3p 1 0 0
chr17:78853967|78854117 hsa-miR-7109-5p 1 0 0
chr17:78853967|78854117 hsa-miR-7161-3p 1 1 0
chr17:78853967|78854117 hsa-miR-6771-5p 1 0 0
chr17:78853967|78854117 hsa-miR-149-3p 1 0 0
chr17:78853967|78854117 hsa-miR-378a-5p 0 1 0
chr17:78853967|78854117 hsa-miR-6824-5p 1 0 0
chr17:78853967|78854117 hsa-miR-605-5p 1 0 0
chr17:78853967|78854117 hsa-miR-6752-3p 0 1 0
chr17:78853967|78854117 hsa-miR-3151-3p 1 0 0
chr17:78853967|78854117 hsa-miR-6859-3p 0 1 0
chr17:78853967|78854117 hsa-miR-4750-3p 1 0 0
chr17:78853967|78854117 hsa-miR-1233-5p 1 0 0
chr17:78853967|78854117 hsa-miR-6778-5p 1 0 0
chr17:78853967|78854117 hsa-miR-6743-5p 1 0 0
chr17:78853967|78854117 hsa-miR-6774-5p 1 0 0
chr17:78853967|78854117 hsa-miR-6779-5p 1 0 0
chr17:78853967|78854117 hsa-miR-6780a-5p 0 1 0
chr17:78853967|78854117 hsa-miR-6879-5p 0 1 0
chr17:78853967|78854117 hsa-miR-4755-5p 0 1 0
chr17:78853967|78854117 hsa-miR-4632-5p 0 1 0
chr17:78853967|78854117 hsa-miR-6735-5p 1 1 0
chr17:78853967|78854117 hsa-miR-6883-5p 0 1 0
chr17:78853967|78854117 hsa-miR-541-3p 1 0 0
chr17:78853967|78854117 hsa-miR-6801-3p 0 1 0
chr17:78853967|78854117 hsa-miR-6810-3p 0 1 0
chr17:78853967|78854117 hsa-miR-10392-3p 0 1 0
chr17:78853967|78854117 hsa-miR-3622a-3p 1 0 0
chr17:78853967|78854117 hsa-miR-5006-3p 0 1 0
chr17:78853967|78854117 hsa-miR-3622b-3p 1 0 0
chr17:78853967|78854117 hsa-miR-498-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:78853967|78854117
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MTRSRWAWGLHATWGSGVLTGALGLP
Nucleotide Sequence CTGACCAGGTCCCGGTGGGCATGGGGGCTGCATGCCACTTGGGGGTCAGGAGTCTTAACAGGTGCTTTGGGGTTGCCG
CircID chr17:78853967|78854117
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MLRLLTPKWHAAPMPTGTWSAQILMTSLSRADWEGIQESAPAPR
Nucleotide Sequence CTGTTAAGACTCCTGACCCCCAAGTGGCATGCAGCCCCCATGCCCACCGGGACCTGGTCAGCACAGATCTTGATGACTTCCCTTTCTAGGGCAGACTGGGAGGGTATCCAGGAATCGGCCCCTGCCCCACGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab