CircRNA Information

General Information
circRNA Basic Information
CircID chr17:78855734|78855859
Strand +
CircType exon
Host Gene ENSG00000035862.11;
Algorism CIRI2;
Sequence GCGCTGCCCCATGATCCCGTGCTACATCTCCTCCCCGGACGAGTGCCTCTGGATGGACTGGGTCACAGAGAAGAACATCAACGGGCACCAGGCCAAGTTCTTCGCCTGCATCAAGAGAAGTGACGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:78855734|78855859 hsa-miR-765 0 1 1
chr17:78855734|78855859 hsa-miR-942-5p 0 0 1
chr17:78855734|78855859 hsa-miR-942-3p 0 0 1
chr17:78855734|78855859 hsa-miR-486-3p 0 0 1
chr17:78855734|78855859 hsa-miR-885-3p 0 0 1
chr17:78855734|78855859 hsa-miR-525-5p 0 1 1
chr17:78855734|78855859 hsa-miR-520a-5p 0 0 1
chr17:78855734|78855859 hsa-miR-455-3p 0 0 1
chr17:78855734|78855859 hsa-miR-1308 0 0 1
chr17:78855734|78855859 hsa-miR-564 1 0 0
chr17:78855734|78855859 hsa-miR-663b 1 0 0
chr17:78855734|78855859 hsa-miR-3137 0 1 0
chr17:78855734|78855859 hsa-miR-4511 0 1 0
chr17:78855734|78855859 hsa-miR-4689 1 0 0
chr17:78855734|78855859 hsa-miR-4706 1 1 0
chr17:78855734|78855859 hsa-miR-4739 1 0 0
chr17:78855734|78855859 hsa-miR-4784 0 1 0
chr17:78855734|78855859 hsa-miR-5698 1 0 0
chr17:78855734|78855859 hsa-miR-6088 1 0 0
chr17:78855734|78855859 hsa-miR-8089 1 0 0
chr17:78855734|78855859 hsa-miR-7106-5p 1 0 0
chr17:78855734|78855859 hsa-miR-6825-5p 0 1 0
chr17:78855734|78855859 hsa-miR-3192-5p 1 0 0
chr17:78855734|78855859 hsa-miR-6746-5p 1 0 0
chr17:78855734|78855859 hsa-miR-4655-5p 1 0 0
chr17:78855734|78855859 hsa-miR-6771-5p 1 0 0
chr17:78855734|78855859 hsa-miR-4690-5p 1 0 0
chr17:78855734|78855859 hsa-miR-92b-5p 1 0 0
chr17:78855734|78855859 hsa-miR-149-3p 1 0 0
chr17:78855734|78855859 hsa-miR-6824-5p 1 0 0
chr17:78855734|78855859 hsa-miR-6773-3p 0 1 0
chr17:78855734|78855859 hsa-miR-3177-3p 1 0 0
chr17:78855734|78855859 hsa-miR-5584-3p 0 1 0
chr17:78855734|78855859 hsa-miR-6808-3p 0 1 0
chr17:78855734|78855859 hsa-miR-758-3p 1 1 0
chr17:78855734|78855859 hsa-miR-4763-3p 1 0 0
chr17:78855734|78855859 hsa-miR-6870-5p 1 0 0
chr17:78855734|78855859 hsa-miR-6756-5p 1 0 0
chr17:78855734|78855859 hsa-miR-6851-5p 1 0 0
chr17:78855734|78855859 hsa-miR-4728-5p 1 0 0
chr17:78855734|78855859 hsa-miR-6777-5p 1 0 0
chr17:78855734|78855859 hsa-miR-6858-5p 1 0 0
chr17:78855734|78855859 hsa-miR-6883-5p 1 1 0
chr17:78855734|78855859 hsa-miR-939-5p 1 0 0
chr17:78855734|78855859 hsa-miR-6511b-5p 0 1 0
chr17:78855734|78855859 hsa-miR-3085-5p 1 0 0
chr17:78855734|78855859 hsa-miR-3679-5p 1 0 0
chr17:78855734|78855859 hsa-miR-6785-5p 1 0 0
chr17:78855734|78855859 hsa-miR-4667-5p 0 1 0
chr17:78855734|78855859 hsa-miR-3130-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:78855734|78855859
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MPHDPVLHLLPGRVPLDGLGHREEHQRAPGQVLRLHQEK
Nucleotide Sequence CTGCCCCATGATCCCGTGCTACATCTCCTCCCCGGACGAGTGCCTCTGGATGGACTGGGTCACAGAGAAGAACATCAACGGGCACCAGGCCAAGTTCTTCGCCTGCATCAAGAGAAGTGA
CircID chr17:78855734|78855859
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MIPCYISSPDECLWMDWVTEKNINGHQAKFFACIKRSD
Nucleotide Sequence ATGATCCCGTGCTACATCTCCTCCCCGGACGAGTGCCTCTGGATGGACTGGGTCACAGAGAAGAACATCAACGGGCACCAGGCCAAGTTCTTCGCCTGCATCAAGAGAAGTGAC
CircID chr17:78855734|78855859
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MMQAKNLAWCPLMFFSVTQSIQRHSSGEEM
Nucleotide Sequence TTGATGCAGGCGAAGAACTTGGCCTGGTGCCCGTTGATGTTCTTCTCTGTGACCCAGTCCATCCAGAGGCACTCGTCCGGGGAGGAGATGTAG
CircID chr17:78855734|78855859
ORF Type ORF4
Protein Length 30
Nucleotide Length 90
Protein Sequence MVPVDVLLCDPVHPEALVRGGDVARDHGAA
Nucleotide Sequence CTGGTGCCCGTTGATGTTCTTCTCTGTGACCCAGTCCATCCAGAGGCACTCGTCCGGGGAGGAGATGTAGCACGGGATCATGGGGCAGCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab