CircRNA Information

General Information
circRNA Basic Information
CircID chr17:80208624|80208872
Strand -
CircType exon
Host Gene ENSG00000141527.15;
Algorism CIRI2;
Sequence AGGAGGGACGTCTTCCCATGCCTTCCCTAGAACCGGAGGCCCCGGACTTCTCTGGAAAACCGCCTGTCTGCAGGCCCGATTCAAATCTATGGGGGCTGCACTTCCCTTTTACATTTTGATGTGTCAAAGGCTTTTGGAGTGACCAAAAGCACAGAGGCAGCGGGTGGGGCGCCTGGGTGGTCCCCAAGGTCGCTGCCACCCTTGCCCGGGGCAGAGGCAGAAGCCCACATATGCTGTGACGCTGGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:80208624|80208872 hsa-miR-133b 0 0 1
chr17:80208624|80208872 hsa-miR-636 0 0 1
chr17:80208624|80208872 hsa-miR-668-5p 0 0 1
chr17:80208624|80208872 hsa-miR-668-3p 0 0 1
chr17:80208624|80208872 hsa-miR-1324 0 0 1
chr17:80208624|80208872 hsa-miR-885-3p 0 0 1
chr17:80208624|80208872 hsa-miR-299-3p 0 0 1
chr17:80208624|80208872 hsa-miR-525-5p 0 0 1
chr17:80208624|80208872 hsa-miR-671-3p 1 0 1
chr17:80208624|80208872 hsa-miR-324-3p 0 0 1
chr17:80208624|80208872 hsa-miR-520a-5p 0 0 1
chr17:80208624|80208872 hsa-miR-483-3p 0 0 1
chr17:80208624|80208872 hsa-miR-519b-3p 0 0 1
chr17:80208624|80208872 hsa-miR-519c-3p 0 0 1
chr17:80208624|80208872 hsa-miR-7 0 0 1
chr17:80208624|80208872 hsa-miR-218 0 0 1
chr17:80208624|80208872 hsa-miR-514 0 0 1
chr17:80208624|80208872 hsa-miR-133a 0 0 1
chr17:80208624|80208872 hsa-miR-519a 0 0 1
chr17:80208624|80208872 hsa-miR-608 1 0 0
chr17:80208624|80208872 hsa-miR-2861 1 0 0
chr17:80208624|80208872 hsa-miR-3937 1 0 0
chr17:80208624|80208872 hsa-miR-3943 1 0 0
chr17:80208624|80208872 hsa-miR-4767 1 0 0
chr17:80208624|80208872 hsa-miR-6069 1 0 0
chr17:80208624|80208872 hsa-miR-8089 1 0 0
chr17:80208624|80208872 hsa-miR-6089 1 0 0
chr17:80208624|80208872 hsa-miR-6727-5p 1 0 0
chr17:80208624|80208872 hsa-miR-3622b-5p 1 0 0
chr17:80208624|80208872 hsa-miR-6793-5p 1 0 0
chr17:80208624|80208872 hsa-miR-3944-3p 1 0 0
chr17:80208624|80208872 hsa-miR-6784-5p 1 0 0
chr17:80208624|80208872 hsa-miR-5001-3p 1 0 0
chr17:80208624|80208872 hsa-miR-6771-5p 1 0 0
chr17:80208624|80208872 hsa-miR-6749-5p 1 0 0
chr17:80208624|80208872 hsa-miR-4446-3p 1 0 0
chr17:80208624|80208872 hsa-miR-7112-3p 1 0 0
chr17:80208624|80208872 hsa-miR-4763-3p 1 0 0
chr17:80208624|80208872 hsa-miR-6775-5p 1 0 0
chr17:80208624|80208872 hsa-miR-1343-5p 1 0 0
chr17:80208624|80208872 hsa-miR-642b-3p 1 0 0
chr17:80208624|80208872 hsa-miR-6780b-5p 1 0 0
chr17:80208624|80208872 hsa-miR-328-5p 1 0 0
chr17:80208624|80208872 hsa-miR-4745-5p 1 0 0
chr17:80208624|80208872 hsa-miR-6729-5p 1 0 0
chr17:80208624|80208872 hsa-miR-6883-5p 1 0 0
chr17:80208624|80208872 hsa-miR-6511b-5p 1 0 0
chr17:80208624|80208872 hsa-miR-10398-3p 1 0 0
chr17:80208624|80208872 hsa-miR-6785-5p 1 0 0
chr17:80208624|80208872 hsa-miR-6724-5p 1 0 0
chr17:80208624|80208872 hsa-miR-642a-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:80208624|80208872
ORF Type ORF1
Protein Length 66
Nucleotide Length 198
Protein Sequence MENRLSAGPIQIYGGCTSLLHFDVSKAFGVTKSTEAAGGAPGWSPRSLPPLPGAEAEAHICCDAGH
Nucleotide Sequence CTGGAAAACCGCCTGTCTGCAGGCCCGATTCAAATCTATGGGGGCTGCACTTCCCTTTTACATTTTGATGTGTCAAAGGCTTTTGGAGTGACCAAAAGCACAGAGGCAGCGGGTGGGGCGCCTGGGTGGTCCCCAAGGTCGCTGCCACCCTTGCCCGGGGCAGAGGCAGAAGCCCACATATGCTGTGACGCTGGCCAC
CircID chr17:80208624|80208872
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MGGPQGRCHPCPGQRQKPTYAVTLA
Nucleotide Sequence CTGGGTGGTCCCCAAGGTCGCTGCCACCCTTGCCCGGGGCAGAGGCAGAAGCCCACATATGCTGTGACGCTGGCC
CircID chr17:80208624|80208872
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MPSLEPEAPDFSGKPPVCRPDSNLWGLHFPFTF
Nucleotide Sequence ATGCCTTCCCTAGAACCGGAGGCCCCGGACTTCTCTGGAAAACCGCCTGTCTGCAGGCCCGATTCAAATCTATGGGGGCTGCACTTCCCTTTTACATTTTGA
CircID chr17:80208624|80208872
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MNRACRQAVFQRSPGPPVLGKAWEDVPP
Nucleotide Sequence TTGAATCGGGCCTGCAGACAGGCGGTTTTCCAGAGAAGTCCGGGGCCTCCGGTTCTAGGGAAGGCATGGGAAGACGTCCCTCCT
CircID chr17:80208624|80208872
ORF Type ORF5
Protein Length 47
Nucleotide Length 144
Protein Sequence MWASASAPGKGGSDLGDHPGAPPAASVLLVTPKAFDTSKCKREVQPP
Nucleotide Sequence ATGTGGGCTTCTGCCTCTGCCCCGGGCAAGGGTGGCAGCGACCTTGGGGACCACCCAGGCGCCCCACCCGCTGCCTCTGTGCTTTTGGTCACTCCAAAAGCCTTTGACACATCAAAATGTAAAAGGGAAGTGCAGCCCCCATAG
CircID chr17:80208624|80208872
ORF Type ORF6
Protein Length 73
Nucleotide Length 219
Protein Sequence MPLPRARVAATLGTTQAPHPLPLCFWSLQKPLTHQNVKGKCSPHRFESGLQTGGFPEKSGASGSREGMGRRPS
Nucleotide Sequence CTGCCTCTGCCCCGGGCAAGGGTGGCAGCGACCTTGGGGACCACCCAGGCGCCCCACCCGCTGCCTCTGTGCTTTTGGTCACTCCAAAAGCCTTTGACACATCAAAATGTAAAAGGGAAGTGCAGCCCCCATAGATTTGAATCGGGCCTGCAGACAGGCGGTTTTCCAGAGAAGTCCGGGGCCTCCGGTTCTAGGGAAGGCATGGGAAGACGTCCCTCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab