CircRNA Information

General Information
circRNA Basic Information
CircID chr17:80250607|80250909
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACAGCGCCTGGCCCAGAGGACTTTTTGTTTGTTTGTTTGTTTTTGAGATGGAGTTTCACTCTTGTTACCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCCCCTGAGCAGCTGGGATTACAGGCGTGCGCCACCATGCCCGTCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTCACTATGTTGGCCAGGCTGGTCTCAAACCCTTGACCTCCCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:80250607|80250909 hsa-miR-25-5p 0 0 1
chr17:80250607|80250909 hsa-miR-25-3p 0 0 1
chr17:80250607|80250909 hsa-miR-32-5p 0 0 1
chr17:80250607|80250909 hsa-miR-32-3p 0 0 1
chr17:80250607|80250909 hsa-miR-363-5p 0 0 1
chr17:80250607|80250909 hsa-miR-363-3p 0 0 1
chr17:80250607|80250909 hsa-miR-367-5p 0 0 1
chr17:80250607|80250909 hsa-miR-367-3p 0 0 1
chr17:80250607|80250909 hsa-miR-326 0 0 1
chr17:80250607|80250909 hsa-miR-495-5p 0 0 1
chr17:80250607|80250909 hsa-miR-495-3p 0 0 1
chr17:80250607|80250909 hsa-miR-92b-5p 0 0 1
chr17:80250607|80250909 hsa-miR-92b-3p 0 0 1
chr17:80250607|80250909 hsa-miR-555 0 0 1
chr17:80250607|80250909 hsa-miR-612 0 0 1
chr17:80250607|80250909 hsa-miR-650 0 0 1
chr17:80250607|80250909 hsa-miR-661 0 0 1
chr17:80250607|80250909 hsa-miR-766-5p 0 0 1
chr17:80250607|80250909 hsa-miR-766-3p 0 0 1
chr17:80250607|80250909 hsa-miR-940 0 0 1
chr17:80250607|80250909 hsa-miR-1228-5p 0 0 1
chr17:80250607|80250909 hsa-miR-1228-3p 0 0 1
chr17:80250607|80250909 hsa-miR-1266-5p 0 0 1
chr17:80250607|80250909 hsa-miR-1266-3p 0 0 1
chr17:80250607|80250909 hsa-miR-1827 0 0 1
chr17:80250607|80250909 hsa-miR-769-5p 0 0 1
chr17:80250607|80250909 hsa-miR-508-5p 0 0 1
chr17:80250607|80250909 hsa-miR-483-5p 0 0 1
chr17:80250607|80250909 hsa-miR-767-3p 0 0 1
chr17:80250607|80250909 hsa-miR-330-5p 0 0 1
chr17:80250607|80250909 hsa-miR-342-3p 0 0 1
chr17:80250607|80250909 hsa-miR-548c-3p 0 0 1
chr17:80250607|80250909 hsa-miR-371-5p 0 0 1
chr17:80250607|80250909 hsa-miR-1285 0 0 1
chr17:80250607|80250909 hsa-miR-24 0 0 1
chr17:80250607|80250909 hsa-miR-220a 0 0 1
chr17:80250607|80250909 hsa-miR-92a 0 0 1
chr17:80250607|80250909 hsa-miR-762 1 0 0
chr17:80250607|80250909 hsa-miR-1202 1 0 0
chr17:80250607|80250909 hsa-miR-1268a 1 0 0
chr17:80250607|80250909 hsa-miR-2861 1 0 0
chr17:80250607|80250909 hsa-miR-3937 1 0 0
chr17:80250607|80250909 hsa-miR-1268b 1 0 0
chr17:80250607|80250909 hsa-miR-4656 1 0 0
chr17:80250607|80250909 hsa-miR-5787 1 0 0
chr17:80250607|80250909 hsa-miR-6860 1 0 0
chr17:80250607|80250909 hsa-miR-6861-5p 1 0 0
chr17:80250607|80250909 hsa-miR-6825-5p 1 0 0
chr17:80250607|80250909 hsa-miR-7851-3p 1 0 0
chr17:80250607|80250909 hsa-miR-6089 1 0 0
chr17:80250607|80250909 hsa-miR-3192-5p 1 0 0
chr17:80250607|80250909 hsa-miR-6746-5p 1 0 0
chr17:80250607|80250909 hsa-miR-4655-5p 1 0 0
chr17:80250607|80250909 hsa-miR-3189-5p 1 0 0
chr17:80250607|80250909 hsa-miR-3180-3p 1 0 0
chr17:80250607|80250909 hsa-miR-6732-5p 1 0 0
chr17:80250607|80250909 hsa-miR-6798-5p 1 0 0
chr17:80250607|80250909 hsa-miR-6771-5p 1 0 0
chr17:80250607|80250909 hsa-miR-7112-5p 1 0 0
chr17:80250607|80250909 hsa-miR-1273h-5p 1 0 0
chr17:80250607|80250909 hsa-miR-4763-3p 1 0 0
chr17:80250607|80250909 hsa-miR-6756-5p 1 0 0
chr17:80250607|80250909 hsa-miR-6803-5p 1 0 0
chr17:80250607|80250909 hsa-miR-6813-5p 1 0 0
chr17:80250607|80250909 hsa-miR-6851-5p 1 0 0
chr17:80250607|80250909 hsa-miR-6722-3p 1 0 0
chr17:80250607|80250909 hsa-miR-6779-5p 1 0 0
chr17:80250607|80250909 hsa-miR-6780a-5p 1 0 0
chr17:80250607|80250909 hsa-miR-4728-5p 1 0 0
chr17:80250607|80250909 hsa-miR-1237-5p 1 0 0
chr17:80250607|80250909 hsa-miR-328-5p 1 0 0
chr17:80250607|80250909 hsa-miR-4649-5p 1 0 0
chr17:80250607|80250909 hsa-miR-6777-5p 1 0 0
chr17:80250607|80250909 hsa-miR-6846-5p 1 0 0
chr17:80250607|80250909 hsa-miR-6848-5p 1 0 0
chr17:80250607|80250909 hsa-miR-6889-5p 1 0 0
chr17:80250607|80250909 hsa-miR-3187-5p 1 0 0
chr17:80250607|80250909 hsa-miR-6885-5p 1 0 0
chr17:80250607|80250909 hsa-miR-939-5p 1 0 0
chr17:80250607|80250909 hsa-miR-1199-5p 1 0 0
chr17:80250607|80250909 hsa-miR-373-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:80250607|80250909
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MLPRLECNGAISAHCNLCLPGSSDSPASAP
Nucleotide Sequence TTGTTACCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCCCCTGA
CircID chr17:80250607|80250909
ORF Type ORF2
Protein Length 53
Nucleotide Length 162
Protein Sequence MFVFEMEFHSCYPGWSAMARSRLTATSASRVQAILLPQPPEQLGLQACATMPV
Nucleotide Sequence TTGTTTGTTTTTGAGATGGAGTTTCACTCTTGTTACCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCCCCTGAGCAGCTGGGATTACAGGCGTGCGCCACCATGCCCGTCTAA
CircID chr17:80250607|80250909
ORF Type ORF3
Protein Length 80
Nucleotide Length 240
Protein Sequence MFVCLFLRWSFTLVTQAGVQWRDLGSLQPLPPGFKRFSCLSPLSSWDYRRAPPCPSNFCIFSRDGVSLCWPGWSQTLDLP
Nucleotide Sequence TTGTTTGTTTGTTTGTTTTTGAGATGGAGTTTCACTCTTGTTACCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCCCCTGAGCAGCTGGGATTACAGGCGTGCGCCACCATGCCCGTCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTCACTATGTTGGCCAGGCTGGTCTCAAACCCTTGACCTCCCG
CircID chr17:80250607|80250909
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MHSSLGNKSETPSQKQTNKQKVLWARRCGSHL
Nucleotide Sequence TTGCACTCCAGCCTGGGTAACAAGAGTGAAACTCCATCTCAAAAACAAACAAACAAACAAAAAGTCCTCTGGGCCAGGCGCTGTGGCTCACACCTGTAA
CircID chr17:80250607|80250909
ORF Type ORF5
Protein Length 65
Nucleotide Length 195
Protein Sequence MLRGLRQENRLNPGGRGCSEPRSRHCTPAWVTRVKLHLKNKQTNKKSSGPGAVAHTCNPSTLGGR
Nucleotide Sequence CTGCTCAGGGGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGTAACAAGAGTGAAACTCCATCTCAAAAACAAACAAACAAACAAAAAGTCCTCTGGGCCAGGCGCTGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab