CircRNA Information

General Information
circRNA Basic Information
CircID chr17:80374480|80375785
Strand +
CircType exon
Host Gene ENSG00000173821.18;
Algorism CIRI2;
Sequence TGCTGGCTTTGGGGGGTCTTGCAGGCCTTCAGAGCAGTCTTAATGCCCAGTGGCTTGCACTCGAGGACAGCTTTGGCCACAGCATCACGGAGAGCCTTGTATTCATCGCCGTACACCAGGTACCTATCCATCTGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:80374480|80375785 hsa-miR-208a-5p 0 0 1
chr17:80374480|80375785 hsa-miR-208a-3p 0 0 1
chr17:80374480|80375785 hsa-miR-130a-5p 0 0 1
chr17:80374480|80375785 hsa-miR-130a-3p 0 0 1
chr17:80374480|80375785 hsa-miR-320a-5p 0 0 1
chr17:80374480|80375785 hsa-miR-320a-3p 0 0 1
chr17:80374480|80375785 hsa-miR-301a-5p 0 0 1
chr17:80374480|80375785 hsa-miR-301a-3p 0 0 1
chr17:80374480|80375785 hsa-miR-130b-5p 0 0 1
chr17:80374480|80375785 hsa-miR-130b-3p 0 0 1
chr17:80374480|80375785 hsa-miR-381-5p 0 0 1
chr17:80374480|80375785 hsa-miR-381-3p 0 0 1
chr17:80374480|80375785 hsa-miR-612 1 1 1
chr17:80374480|80375785 hsa-miR-619-5p 0 0 1
chr17:80374480|80375785 hsa-miR-619-3p 0 0 1
chr17:80374480|80375785 hsa-miR-624-5p 0 0 1
chr17:80374480|80375785 hsa-miR-624-3p 0 0 1
chr17:80374480|80375785 hsa-miR-454-5p 0 0 1
chr17:80374480|80375785 hsa-miR-454-3p 0 0 1
chr17:80374480|80375785 hsa-miR-300 0 0 1
chr17:80374480|80375785 hsa-miR-301b-5p 0 0 1
chr17:80374480|80375785 hsa-miR-301b-3p 0 0 1
chr17:80374480|80375785 hsa-miR-208b-5p 0 0 1
chr17:80374480|80375785 hsa-miR-208b-3p 0 0 1
chr17:80374480|80375785 hsa-miR-663b 0 0 1
chr17:80374480|80375785 hsa-miR-320b 0 1 1
chr17:80374480|80375785 hsa-miR-320c 0 0 1
chr17:80374480|80375785 hsa-miR-320d 0 0 1
chr17:80374480|80375785 hsa-miR-1285 0 0 1
chr17:80374480|80375785 hsa-miR-499-5p 0 0 1
chr17:80374480|80375785 hsa-miR-4429 0 1 0
chr17:80374480|80375785 hsa-miR-4741 1 0 0
chr17:80374480|80375785 hsa-miR-5691 0 1 0
chr17:80374480|80375785 hsa-miR-6126 0 1 0
chr17:80374480|80375785 hsa-miR-6860 1 1 0
chr17:80374480|80375785 hsa-miR-7974 1 0 0
chr17:80374480|80375785 hsa-miR-7978 1 1 0
chr17:80374480|80375785 hsa-miR-504-3p 1 0 0
chr17:80374480|80375785 hsa-miR-6861-5p 1 0 0
chr17:80374480|80375785 hsa-miR-3677-5p 1 0 0
chr17:80374480|80375785 hsa-miR-432-5p 1 0 0
chr17:80374480|80375785 hsa-miR-7108-5p 1 0 0
chr17:80374480|80375785 hsa-miR-3667-5p 0 1 0
chr17:80374480|80375785 hsa-miR-1226-5p 0 1 0
chr17:80374480|80375785 hsa-miR-1909-5p 1 0 0
chr17:80374480|80375785 hsa-miR-6877-5p 1 0 0
chr17:80374480|80375785 hsa-miR-597-3p 1 0 0
chr17:80374480|80375785 hsa-miR-3605-3p 1 1 0
chr17:80374480|80375785 hsa-miR-6775-5p 1 0 0
chr17:80374480|80375785 hsa-miR-6774-5p 1 0 0
chr17:80374480|80375785 hsa-miR-4685-5p 1 0 0
chr17:80374480|80375785 hsa-miR-4726-5p 1 0 0
chr17:80374480|80375785 hsa-miR-3187-5p 1 0 0
chr17:80374480|80375785 hsa-miR-6511b-5p 1 0 0
chr17:80374480|80375785 hsa-miR-498-5p 1 0 0
chr17:80374480|80375785 hsa-miR-6849-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:80374480|80375785
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MQAFRAVLMPSGLHSRTALATASRRALYSSPYTRYLSIW
Nucleotide Sequence TTGCAGGCCTTCAGAGCAGTCTTAATGCCCAGTGGCTTGCACTCGAGGACAGCTTTGGCCACAGCATCACGGAGAGCCTTGTATTCATCGCCGTACACCAGGTACCTATCCATCTGG
CircID chr17:80374480|80375785
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence LALGGLAGLQSSLNAQWLALEDSFGHSITESLVFIAVHQVPIHL
Nucleotide Sequence CTGGCTTTGGGGGGTCTTGCAGGCCTTCAGAGCAGTCTTAATGCCCAGTGGCTTGCACTCGAGGACAGCTTTGGCCACAGCATCACGGAGAGCCTTGTATTCATCGCCGTACACCAGGTACCTATCCATCTG
CircID chr17:80374480|80375785
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MNTRLSVMLWPKLSSSASHWALRLL
Nucleotide Sequence ATGAATACAAGGCTCTCCGTGATGCTGTGGCCAAAGCTGTCCTCGAGTGCAAGCCACTGGGCATTAAGACTGCTCTGA
CircID chr17:80374480|80375785
ORF Type ORF4
Protein Length 43
Nucleotide Length 129
Protein Sequence MDRYLVYGDEYKALRDAVAKAVLECKPLGIKTALKACKTPQSQ
Nucleotide Sequence ATGGATAGGTACCTGGTGTACGGCGATGAATACAAGGCTCTCCGTGATGCTGTGGCCAAAGCTGTCCTCGAGTGCAAGCCACTGGGCATTAAGACTGCTCTGAAGGCCTGCAAGACCCCCCAAAGCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab