CircRNA Information

General Information
circRNA Basic Information
CircID chr17:80965512|80965780
Strand -
CircType exon
Host Gene ENSG00000141564.12;
Algorism CIRI2;
Sequence AATGATGGTATTTTGAAAAGTGTTCTTTCCGTGTTCGTCGGGAATCAGGATTATTGAGAGGTGAAGGAGCCAGGTGGCTTCATTCTGGCGGTGAGAGGCCCACGACCACGGGAGTGAGAGCTGGTGTGGCGAGGCCCGGCTCTCCTGCGGTGTGGCTGGTGGCCTGCCGTGGCCAAGAGCATCTTCTGGGTGGATGGAACCCTGCCTGGTCACATTTGGCCAGAGACACACCTGGCCCTCAGGGGGCTGAGCTGGAGACTGAGCTGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:80965512|80965780 hsa-miR-205-5p 0 0 1
chr17:80965512|80965780 hsa-miR-205-3p 0 0 1
chr17:80965512|80965780 hsa-miR-149-5p 0 0 1
chr17:80965512|80965780 hsa-miR-149-3p 0 0 1
chr17:80965512|80965780 hsa-miR-326 0 0 1
chr17:80965512|80965780 hsa-miR-412-5p 0 0 1
chr17:80965512|80965780 hsa-miR-412-3p 0 0 1
chr17:80965512|80965780 hsa-miR-588 0 0 1
chr17:80965512|80965780 hsa-miR-593-5p 0 0 1
chr17:80965512|80965780 hsa-miR-593-3p 0 0 1
chr17:80965512|80965780 hsa-miR-607 0 0 1
chr17:80965512|80965780 hsa-miR-622 0 0 1
chr17:80965512|80965780 hsa-miR-766-5p 0 0 1
chr17:80965512|80965780 hsa-miR-766-3p 0 0 1
chr17:80965512|80965780 hsa-miR-940 0 0 1
chr17:80965512|80965780 hsa-miR-1226-5p 0 0 1
chr17:80965512|80965780 hsa-miR-1226-3p 0 0 1
chr17:80965512|80965780 hsa-miR-1229-5p 0 0 1
chr17:80965512|80965780 hsa-miR-1229-3p 0 0 1
chr17:80965512|80965780 hsa-miR-1305 0 0 1
chr17:80965512|80965780 hsa-miR-1207-5p 0 0 1
chr17:80965512|80965780 hsa-miR-125a-5p 0 0 1
chr17:80965512|80965780 hsa-miR-483-3p 0 0 1
chr17:80965512|80965780 hsa-miR-330-5p 0 0 1
chr17:80965512|80965780 hsa-miR-125b 0 0 1
chr17:80965512|80965780 hsa-miR-500 0 0 1
chr17:80965512|80965780 hsa-miR-220a 0 0 1
chr17:80965512|80965780 hsa-miR-663a 1 0 0
chr17:80965512|80965780 hsa-miR-512-5p 1 0 0
chr17:80965512|80965780 hsa-miR-423-3p 1 0 0
chr17:80965512|80965780 hsa-miR-3194-5p 1 0 0
chr17:80965512|80965780 hsa-miR-939-3p 1 0 0
chr17:80965512|80965780 hsa-miR-3677-3p 1 0 0
chr17:80965512|80965780 hsa-miR-7158-5p 1 0 0
chr17:80965512|80965780 hsa-miR-4763-3p 1 0 0
chr17:80965512|80965780 hsa-miR-6836-5p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:80965512|80965780
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MVWRGPALLRCGWWPAVAKSIFWVDGTLPGHIWPETHLALRGLSWRLSW
Nucleotide Sequence CTGGTGTGGCGAGGCCCGGCTCTCCTGCGGTGTGGCTGGTGGCCTGCCGTGGCCAAGAGCATCTTCTGGGTGGATGGAACCCTGCCTGGTCACATTTGGCCAGAGACACACCTGGCCCTCAGGGGGCTGAGCTGGAGACTGAGCTGG
CircID chr17:80965512|80965780
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MPWPRASSGWMEPCLVTFGQRHTWPSGG
Nucleotide Sequence CTGCCGTGGCCAAGAGCATCTTCTGGGTGGATGGAACCCTGCCTGGTCACATTTGGCCAGAGACACACCTGGCCCTCAGGGGGCTGA
CircID chr17:80965512|80965780
ORF Type ORF3
Protein Length 72
Nucleotide Length 216
Protein Sequence MRGEGARWLHSGGERPTTTGVRAGVARPGSPAVWLVACRGQEHLLGGWNPAWSHLARDTPGPQGAELETELG
Nucleotide Sequence TTGAGAGGTGAAGGAGCCAGGTGGCTTCATTCTGGCGGTGAGAGGCCCACGACCACGGGAGTGAGAGCTGGTGTGGCGAGGCCCGGCTCTCCTGCGGTGTGGCTGGTGGCCTGCCGTGGCCAAGAGCATCTTCTGGGTGGATGGAACCCTGCCTGGTCACATTTGGCCAGAGACACACCTGGCCCTCAGGGGGCTGAGCTGGAGACTGAGCTGGGG
CircID chr17:80965512|80965780
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MLLATAGHQPHRRRAGPRHTSSHSRGRGPLTARMKPPGSFTSQ
Nucleotide Sequence ATGCTCTTGGCCACGGCAGGCCACCAGCCACACCGCAGGAGAGCCGGGCCTCGCCACACCAGCTCTCACTCCCGTGGTCGTGGGCCTCTCACCGCCAGAATGAAGCCACCTGGCTCCTTCACCTCTCAATAA
CircID chr17:80965512|80965780
ORF Type ORF5
Protein Length 47
Nucleotide Length 144
Protein Sequence MAKCDQAGFHPPRRCSWPRQATSHTAGEPGLATPALTPVVVGLSPPE
Nucleotide Sequence CTGGCCAAATGTGACCAGGCAGGGTTCCATCCACCCAGAAGATGCTCTTGGCCACGGCAGGCCACCAGCCACACCGCAGGAGAGCCGGGCCTCGCCACACCAGCTCTCACTCCCGTGGTCGTGGGCCTCTCACCGCCAGAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab