CircRNA Information

General Information
circRNA Basic Information
CircID chr17:81117556|81117777
Strand +
CircType exon
Host Gene ENSG00000181409.10;
Algorism CIRI2;
Sequence AGGCTGCTCCCACCTGGGTCCCGCTGTGGCCACGGTGGGCAGCCCAAAAGATCAGGGGTGGAGGGGCTTCCAGGCTGTACTCCTGCCCCGTGGGCCCCGTTCTAGAGGTGCCCTTGGCAGGACCGTGCAGGCAGCTCCCCTCTGTGGGGCAGTATCTGGTCCTGTGCCCCAGCTGCCAAAGGAGAGTGGGGGCCATGCCCCGCAGTCAGTGTTGGGGGGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:81117556|81117777 hsa-miR-22-5p 0 0 1
chr17:81117556|81117777 hsa-miR-22-3p 0 0 1
chr17:81117556|81117777 hsa-miR-96-5p 0 0 1
chr17:81117556|81117777 hsa-miR-96-3p 0 0 1
chr17:81117556|81117777 hsa-miR-182-5p 0 0 1
chr17:81117556|81117777 hsa-miR-182-3p 0 0 1
chr17:81117556|81117777 hsa-miR-141-5p 0 0 1
chr17:81117556|81117777 hsa-miR-141-3p 0 0 1
chr17:81117556|81117777 hsa-miR-200a-5p 0 0 1
chr17:81117556|81117777 hsa-miR-200a-3p 0 0 1
chr17:81117556|81117777 hsa-miR-558 0 1 1
chr17:81117556|81117777 hsa-miR-588 0 1 1
chr17:81117556|81117777 hsa-miR-1271-5p 0 0 1
chr17:81117556|81117777 hsa-miR-1271-3p 0 0 1
chr17:81117556|81117777 hsa-miR-744-5p 0 0 1
chr17:81117556|81117777 hsa-miR-744-3p 0 0 1
chr17:81117556|81117777 hsa-miR-920 0 0 1
chr17:81117556|81117777 hsa-miR-939-5p 0 0 1
chr17:81117556|81117777 hsa-miR-939-3p 0 0 1
chr17:81117556|81117777 hsa-miR-1204 0 1 1
chr17:81117556|81117777 hsa-miR-671-5p 1 0 1
chr17:81117556|81117777 hsa-miR-1225-3p 1 0 1
chr17:81117556|81117777 hsa-miR-486-3p 0 1 1
chr17:81117556|81117777 hsa-miR-885-3p 0 0 1
chr17:81117556|81117777 hsa-miR-1207-3p 0 0 1
chr17:81117556|81117777 hsa-miR-324-3p 0 0 1
chr17:81117556|81117777 hsa-miR-1280 0 0 1
chr17:81117556|81117777 hsa-miR-1254 0 0 1
chr17:81117556|81117777 hsa-miR-762 1 0 0
chr17:81117556|81117777 hsa-miR-1470 1 0 0
chr17:81117556|81117777 hsa-miR-711 0 1 0
chr17:81117556|81117777 hsa-miR-4254 0 1 0
chr17:81117556|81117777 hsa-miR-3943 0 1 0
chr17:81117556|81117777 hsa-miR-4734 0 1 0
chr17:81117556|81117777 hsa-miR-4759 0 1 0
chr17:81117556|81117777 hsa-miR-5090 0 1 0
chr17:81117556|81117777 hsa-miR-5787 1 1 0
chr17:81117556|81117777 hsa-miR-6069 1 0 0
chr17:81117556|81117777 hsa-miR-4731-5p 0 1 0
chr17:81117556|81117777 hsa-miR-4700-3p 0 1 0
chr17:81117556|81117777 hsa-miR-4433a-3p 0 1 0
chr17:81117556|81117777 hsa-miR-296-5p 0 1 0
chr17:81117556|81117777 hsa-miR-6762-3p 0 1 0
chr17:81117556|81117777 hsa-miR-6727-5p 1 0 0
chr17:81117556|81117777 hsa-miR-6721-5p 0 1 0
chr17:81117556|81117777 hsa-miR-5008-5p 1 0 0
chr17:81117556|81117777 hsa-miR-6882-3p 0 1 0
chr17:81117556|81117777 hsa-miR-7109-3p 1 1 0
chr17:81117556|81117777 hsa-miR-4786-3p 1 0 0
chr17:81117556|81117777 hsa-miR-6894-3p 0 1 0
chr17:81117556|81117777 hsa-miR-4713-3p 0 1 0
chr17:81117556|81117777 hsa-miR-6786-3p 1 0 0
chr17:81117556|81117777 hsa-miR-6769a-3p 1 1 0
chr17:81117556|81117777 hsa-miR-4758-3p 1 0 0
chr17:81117556|81117777 hsa-miR-6887-3p 0 1 0
chr17:81117556|81117777 hsa-miR-6793-3p 0 1 0
chr17:81117556|81117777 hsa-miR-6886-3p 1 0 0
chr17:81117556|81117777 hsa-miR-4749-3p 1 1 0
chr17:81117556|81117777 hsa-miR-328-3p 0 1 0
chr17:81117556|81117777 hsa-miR-6777-3p 1 1 0
chr17:81117556|81117777 hsa-miR-4717-5p 1 1 0
chr17:81117556|81117777 hsa-miR-1249-3p 1 0 0
chr17:81117556|81117777 hsa-miR-6787-5p 1 0 0
chr17:81117556|81117777 hsa-miR-6775-5p 1 1 0
chr17:81117556|81117777 hsa-miR-1343-5p 0 1 0
chr17:81117556|81117777 hsa-miR-6726-5p 1 1 0
chr17:81117556|81117777 hsa-miR-6756-5p 1 0 0
chr17:81117556|81117777 hsa-miR-328-5p 1 0 0
chr17:81117556|81117777 hsa-miR-6766-5p 0 1 0
chr17:81117556|81117777 hsa-miR-4722-3p 0 1 0
chr17:81117556|81117777 hsa-miR-6756-3p 1 0 0
chr17:81117556|81117777 hsa-miR-6511b-3p 1 0 0
chr17:81117556|81117777 hsa-miR-3085-3p 1 1 0
chr17:81117556|81117777 hsa-miR-1234-3p 1 0 0
chr17:81117556|81117777 hsa-miR-6806-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:81117556|81117777
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MLPPGSRCGHGGQPKRSGVEGLPGCTPAPWAPF
Nucleotide Sequence CTGCTCCCACCTGGGTCCCGCTGTGGCCACGGTGGGCAGCCCAAAAGATCAGGGGTGGAGGGGCTTCCAGGCTGTACTCCTGCCCCGTGGGCCCCGTTCTAG
CircID chr17:81117556|81117777
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MWGSIWSCAPAAKGEWGPCPAVSVGGL
Nucleotide Sequence CTGTGGGGCAGTATCTGGTCCTGTGCCCCAGCTGCCAAAGGAGAGTGGGGGCCATGCCCCGCAGTCAGTGTTGGGGGGCTC
CircID chr17:81117556|81117777
ORF Type ORF3
Protein Length 69
Nucleotide Length 207
Protein Sequence MGPAVATVGSPKDQGWRGFQAVLLPRGPRSRGALGRTVQAAPLCGAVSGPVPQLPKESGGHAPQSVLGG
Nucleotide Sequence CTGGGTCCCGCTGTGGCCACGGTGGGCAGCCCAAAAGATCAGGGGTGGAGGGGCTTCCAGGCTGTACTCCTGCCCCGTGGGCCCCGTTCTAGAGGTGCCCTTGGCAGGACCGTGCAGGCAGCTCCCCTCTGTGGGGCAGTATCTGGTCCTGTGCCCCAGCTGCCAAAGGAGAGTGGGGGCCATGCCCCGCAGTCAGTGTTGGGGGGC
CircID chr17:81117556|81117777
ORF Type ORF4
Protein Length 66
Nucleotide Length 198
Protein Sequence MWPRWAAQKIRGGGASRLYSCPVGPVLEVPLAGPCRQLPSVGQYLVLCPSCQRRVGAMPRSQCWGA
Nucleotide Sequence CTGTGGCCACGGTGGGCAGCCCAAAAGATCAGGGGTGGAGGGGCTTCCAGGCTGTACTCCTGCCCCGTGGGCCCCGTTCTAGAGGTGCCCTTGGCAGGACCGTGCAGGCAGCTCCCCTCTGTGGGGCAGTATCTGGTCCTGTGCCCCAGCTGCCAAAGGAGAGTGGGGGCCATGCCCCGCAGTCAGTGTTGGGGGGCT
CircID chr17:81117556|81117777
ORF Type ORF5
Protein Length 35
Nucleotide Length 108
Protein Sequence MTAGHGPHSPLAAGAQDQILPHRGELPARSCQGHL
Nucleotide Sequence CTGACTGCGGGGCATGGCCCCCACTCTCCTTTGGCAGCTGGGGCACAGGACCAGATACTGCCCCACAGAGGGGAGCTGCCTGCACGGTCCTGCCAAGGGCACCTCTAG
CircID chr17:81117556|81117777
ORF Type ORF6
Protein Length 68
Nucleotide Length 204
Protein Sequence MRGMAPTLLWQLGHRTRYCPTEGSCLHGPAKGTSRTGPTGQEYSLEAPPPLIFWAAHRGHSGTQVGAA
Nucleotide Sequence CTGCGGGGCATGGCCCCCACTCTCCTTTGGCAGCTGGGGCACAGGACCAGATACTGCCCCACAGAGGGGAGCTGCCTGCACGGTCCTGCCAAGGGCACCTCTAGAACGGGGCCCACGGGGCAGGAGTACAGCCTGGAAGCCCCTCCACCCCTGATCTTTTGGGCTGCCCACCGTGGCCACAGCGGGACCCAGGTGGGAGCAGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab