CircRNA Information

General Information
circRNA Basic Information
CircID chr17:81245607|81245860
Strand -
CircType exon
Host Gene ENSG00000157637.11;
Algorism CIRI2;
Sequence CACCTGCAGAGCTCCCCCCGCAGCCTGGCGGAGCTGGGCATCCAGGGCGCCACGGAGGTCGTTCACCTGGACATCAGGCAGGGGGTTAAGGCCAATGATGACCCCATCCCTCGGGGCCAGCTGACCCTCTGCATGAGGGCCAAGGTCCCGCCGTCGCCTCCGGAGGTCGGAGCCAGCCTGCAGTTTCAGGTCCCGGTTGGGCTTGGCATTGTCCGGCCTCTGGCCCCCCGGGACAGCTCGTTTGAGCCCCAGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:81245607|81245860 hsa-miR-198 0 0 1
chr17:81245607|81245860 hsa-miR-149-5p 0 0 1
chr17:81245607|81245860 hsa-miR-149-3p 0 0 1
chr17:81245607|81245860 hsa-miR-328-5p 0 0 1
chr17:81245607|81245860 hsa-miR-328-3p 0 0 1
chr17:81245607|81245860 hsa-miR-492 0 0 1
chr17:81245607|81245860 hsa-miR-604 0 0 1
chr17:81245607|81245860 hsa-miR-657 0 0 1
chr17:81245607|81245860 hsa-miR-744-5p 0 0 1
chr17:81245607|81245860 hsa-miR-744-3p 0 0 1
chr17:81245607|81245860 hsa-miR-920 0 0 1
chr17:81245607|81245860 hsa-miR-939-5p 0 0 1
chr17:81245607|81245860 hsa-miR-939-3p 0 0 1
chr17:81245607|81245860 hsa-miR-1203 0 0 1
chr17:81245607|81245860 hsa-miR-1205 0 0 1
chr17:81245607|81245860 hsa-miR-1291 0 0 1
chr17:81245607|81245860 hsa-miR-125a-3p 0 0 1
chr17:81245607|81245860 hsa-miR-615-5p 0 0 1
chr17:81245607|81245860 hsa-miR-1184 0 0 1
chr17:81245607|81245860 hsa-miR-566 0 0 1
chr17:81245607|81245860 hsa-miR-1207-3p 0 0 1
chr17:81245607|81245860 hsa-miR-509-3-5p 0 0 1
chr17:81245607|81245860 hsa-miR-509-5p 0 0 1
chr17:81245607|81245860 hsa-miR-371-5p 0 0 1
chr17:81245607|81245860 hsa-miR-1201 0 0 1
chr17:81245607|81245860 hsa-miR-637 1 0 0
chr17:81245607|81245860 hsa-miR-658 1 0 0
chr17:81245607|81245860 hsa-miR-1183 1 0 0
chr17:81245607|81245860 hsa-miR-4281 1 0 0
chr17:81245607|81245860 hsa-miR-4449 1 0 0
chr17:81245607|81245860 hsa-miR-3960 1 0 0
chr17:81245607|81245860 hsa-miR-4734 1 0 0
chr17:81245607|81245860 hsa-miR-4741 1 0 0
chr17:81245607|81245860 hsa-miR-8089 1 0 0
chr17:81245607|81245860 hsa-miR-4731-5p 1 0 0
chr17:81245607|81245860 hsa-miR-1273h-3p 1 0 0
chr17:81245607|81245860 hsa-miR-185-3p 1 0 0
chr17:81245607|81245860 hsa-miR-6782-5p 1 0 0
chr17:81245607|81245860 hsa-miR-3944-3p 1 0 0
chr17:81245607|81245860 hsa-miR-4283 1 0 0
chr17:81245607|81245860 hsa-miR-10400-5p 1 0 0
chr17:81245607|81245860 hsa-miR-4763-3p 1 0 0
chr17:81245607|81245860 hsa-miR-6775-5p 1 0 0
chr17:81245607|81245860 hsa-miR-1343-5p 1 0 0
chr17:81245607|81245860 hsa-miR-5001-5p 1 0 0
chr17:81245607|81245860 hsa-miR-6726-5p 1 0 0
chr17:81245607|81245860 hsa-miR-6855-5p 1 0 0
chr17:81245607|81245860 hsa-miR-10400-3p 1 0 0
chr17:81245607|81245860 hsa-miR-6775-3p 1 0 0
chr17:81245607|81245860 hsa-miR-10392-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:81245607|81245860
ORF Type ORF1
Protein Length 83
Nucleotide Length 249
Protein Sequence MQSSPRSLAELGIQGATEVVHLDIRQGVKANDDPIPRGQLTLCMRAKVPPSPPEVGASLQFQVPVGLGIVRPLAPRDSSFEPQ
Nucleotide Sequence CTGCAGAGCTCCCCCCGCAGCCTGGCGGAGCTGGGCATCCAGGGCGCCACGGAGGTCGTTCACCTGGACATCAGGCAGGGGGTTAAGGCCAATGATGACCCCATCCCTCGGGGCCAGCTGACCCTCTGCATGAGGGCCAAGGTCCCGCCGTCGCCTCCGGAGGTCGGAGCCAGCCTGCAGTTTCAGGTCCCGGTTGGGCTTGGCATTGTCCGGCCTCTGGCCCCCCGGGACAGCTCGTTTGAGCCCCAG
CircID chr17:81245607|81245860
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MHEGQGPAVASGGRSQPAVSGPGWAWHCPASGPPGQLV
Nucleotide Sequence CTGCATGAGGGCCAAGGTCCCGCCGTCGCCTCCGGAGGTCGGAGCCAGCCTGCAGTTTCAGGTCCCGGTTGGGCTTGGCATTGTCCGGCCTCTGGCCCCCCGGGACAGCTCGTTTGA
CircID chr17:81245607|81245860
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MAPTSGGDGGTLALMQRVSWPRGMGSSLALTPCLMSR
Nucleotide Sequence CTGGCTCCGACCTCCGGAGGCGACGGCGGGACCTTGGCCCTCATGCAGAGGGTCAGCTGGCCCCGAGGGATGGGGTCATCATTGGCCTTAACCCCCTGCCTGATGTCCAGGTGA
CircID chr17:81245607|81245860
ORF Type ORF4
Protein Length 84
Nucleotide Length 252
Protein Sequence LGLKRAVPGGQRPDNAKPNRDLKLQAGSDLRRRRRDLGPHAEGQLAPRDGVIIGLNPLPDVQVNDLRGALDAQLRQAAGGALQV
Nucleotide Sequence CTGGGGCTCAAACGAGCTGTCCCGGGGGGCCAGAGGCCGGACAATGCCAAGCCCAACCGGGACCTGAAACTGCAGGCTGGCTCCGACCTCCGGAGGCGACGGCGGGACCTTGGCCCTCATGCAGAGGGTCAGCTGGCCCCGAGGGATGGGGTCATCATTGGCCTTAACCCCCTGCCTGATGTCCAGGTGAACGACCTCCGTGGCGCCCTGGATGCCCAGCTCCGCCAGGCTGCGGGGGGAGCTCTGCAGGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab