CircRNA Information

General Information
circRNA Basic Information
CircID chr17:81557046|81557190
Strand -
CircType exon
Host Gene ENSG00000182446.12;
Algorism CIRI2;
Sequence CTCCTCTCGGGACCAGGAGACTGGCAGCCGCTGTGTTCACCTGGGCAGGTGTGCACCCAGTCACCCCCACTGGATTATGGTGCTGGTAGCATGAGAGGGTGTGTCCACACCAAGGGCAGGTGAAGATGCGAGGTGGGGCTGAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:81557046|81557190 hsa-miR-29a-5p 0 0 1
chr17:81557046|81557190 hsa-miR-29a-3p 0 0 1
chr17:81557046|81557190 hsa-miR-134-5p 0 0 1
chr17:81557046|81557190 hsa-miR-134-3p 0 0 1
chr17:81557046|81557190 hsa-miR-29c-5p 0 0 1
chr17:81557046|81557190 hsa-miR-29c-3p 0 0 1
chr17:81557046|81557190 hsa-miR-412-5p 0 0 1
chr17:81557046|81557190 hsa-miR-412-3p 0 0 1
chr17:81557046|81557190 hsa-miR-634 0 0 1
chr17:81557046|81557190 hsa-miR-938 0 0 1
chr17:81557046|81557190 hsa-miR-1228-5p 0 0 1
chr17:81557046|81557190 hsa-miR-1228-3p 0 0 1
chr17:81557046|81557190 hsa-miR-1825 0 0 1
chr17:81557046|81557190 hsa-miR-125a-3p 0 0 1
chr17:81557046|81557190 hsa-miR-767-5p 0 0 1
chr17:81557046|81557190 hsa-miR-199a-5p 0 0 1
chr17:81557046|81557190 hsa-miR-1224-3p 0 0 1
chr17:81557046|81557190 hsa-miR-199b-5p 0 0 1
chr17:81557046|81557190 hsa-miR-362-3p 0 0 1
chr17:81557046|81557190 hsa-miR-329 0 0 1
chr17:81557046|81557190 hsa-miR-29b 0 0 1
chr17:81557046|81557190 hsa-miR-1202 1 0 0
chr17:81557046|81557190 hsa-miR-718 1 0 0
chr17:81557046|81557190 hsa-miR-3943 1 0 0
chr17:81557046|81557190 hsa-miR-3972 1 0 0
chr17:81557046|81557190 hsa-miR-4665-3p 1 0 0
chr17:81557046|81557190 hsa-miR-593-5p 1 0 0
chr17:81557046|81557190 hsa-miR-3189-5p 1 0 0
chr17:81557046|81557190 hsa-miR-6765-3p 1 0 0
chr17:81557046|81557190 hsa-miR-4763-5p 1 0 0
chr17:81557046|81557190 hsa-miR-4787-5p 1 0 0
chr17:81557046|81557190 hsa-miR-6870-3p 1 0 0
chr17:81557046|81557190 hsa-miR-4758-3p 1 0 0
chr17:81557046|81557190 hsa-miR-6865-3p 1 0 0
chr17:81557046|81557190 hsa-miR-4727-5p 1 0 0
chr17:81557046|81557190 hsa-miR-6754-3p 1 0 0
chr17:81557046|81557190 hsa-miR-4745-5p 1 0 0
chr17:81557046|81557190 hsa-miR-4722-3p 1 0 0
chr17:81557046|81557190 hsa-miR-10392-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:81557046|81557190
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MCSPGQVCTQSPPLDYGAGSMRGCVHTKGR
Nucleotide Sequence CTGTGTTCACCTGGGCAGGTGTGCACCCAGTCACCCCCACTGGATTATGGTGCTGGTAGCATGAGAGGGTGTGTCCACACCAAGGGCAGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab