CircRNA Information

General Information
circRNA Basic Information
CircID chr17:81843599|81843890
Strand +
CircType exon
Host Gene ENSG00000185624.13;
Algorism CIRI2;
Sequence CTCTCTGAAGTGACACCTCACCCCTACACACCGTCCGTTCACCCCCGTCTCTTCCTTCTGCTTTTCGGTTTTTGGAAAGGGATCCATCTCCAGGCAGCCCACCCTGGTGGGGCTTGTTTCCTGAAACCATGATGTACTTTTTCATACATGAGTCTGTCCAGAGTGCTTGCTACCGTGTTCGGAGTCTCGCTGCCTCCCTCCCGCGGGAGGTTTCTCCTCTTTTTGAAAATTCCGTCTGTGGGATTTTTAGACATTTTTCGACATCAGGGTATTTGTTCCACCTTGGCCAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:81843599|81843890 hsa-miR-10a-5p 0 0 1
chr17:81843599|81843890 hsa-miR-10a-3p 0 0 1
chr17:81843599|81843890 hsa-miR-10b-5p 0 0 1
chr17:81843599|81843890 hsa-miR-10b-3p 0 0 1
chr17:81843599|81843890 hsa-miR-204-5p 0 0 1
chr17:81843599|81843890 hsa-miR-204-3p 0 0 1
chr17:81843599|81843890 hsa-miR-211-5p 0 0 1
chr17:81843599|81843890 hsa-miR-211-3p 0 0 1
chr17:81843599|81843890 hsa-miR-422a 0 0 1
chr17:81843599|81843890 hsa-miR-583 0 1 1
chr17:81843599|81843890 hsa-miR-597-5p 0 0 1
chr17:81843599|81843890 hsa-miR-597-3p 0 0 1
chr17:81843599|81843890 hsa-miR-605-5p 0 0 1
chr17:81843599|81843890 hsa-miR-605-3p 0 0 1
chr17:81843599|81843890 hsa-miR-607 0 0 1
chr17:81843599|81843890 hsa-miR-620 0 0 1
chr17:81843599|81843890 hsa-miR-650 1 1 1
chr17:81843599|81843890 hsa-miR-661 0 0 1
chr17:81843599|81843890 hsa-miR-668-5p 0 0 1
chr17:81843599|81843890 hsa-miR-668-3p 0 0 1
chr17:81843599|81843890 hsa-miR-298 1 1 1
chr17:81843599|81843890 hsa-miR-541-5p 0 0 1
chr17:81843599|81843890 hsa-miR-541-3p 0 0 1
chr17:81843599|81843890 hsa-miR-887-5p 0 0 1
chr17:81843599|81843890 hsa-miR-887-3p 0 0 1
chr17:81843599|81843890 hsa-miR-873-5p 0 0 1
chr17:81843599|81843890 hsa-miR-873-3p 0 0 1
chr17:81843599|81843890 hsa-miR-548k 0 0 1
chr17:81843599|81843890 hsa-miR-1294 0 0 1
chr17:81843599|81843890 hsa-miR-1305 0 0 1
chr17:81843599|81843890 hsa-miR-548n 0 0 1
chr17:81843599|81843890 hsa-miR-1270 0 0 1
chr17:81843599|81843890 hsa-miR-1252-5p 0 0 1
chr17:81843599|81843890 hsa-miR-1252-3p 0 0 1
chr17:81843599|81843890 hsa-miR-1321 0 0 1
chr17:81843599|81843890 hsa-miR-1827 0 1 1
chr17:81843599|81843890 hsa-miR-885-3p 0 0 1
chr17:81843599|81843890 hsa-miR-654-5p 0 1 1
chr17:81843599|81843890 hsa-miR-483-5p 1 1 1
chr17:81843599|81843890 hsa-miR-188-5p 0 0 1
chr17:81843599|81843890 hsa-miR-188-3p 0 0 1
chr17:81843599|81843890 hsa-miR-548c-3p 0 0 1
chr17:81843599|81843890 hsa-miR-548d-3p 0 0 1
chr17:81843599|81843890 hsa-miR-378 0 0 1
chr17:81843599|81843890 hsa-miR-1254 0 0 1
chr17:81843599|81843890 hsa-miR-499-3p 0 0 1
chr17:81843599|81843890 hsa-miR-608 1 0 0
chr17:81843599|81843890 hsa-miR-663a 1 0 0
chr17:81843599|81843890 hsa-miR-658 1 0 0
chr17:81843599|81843890 hsa-miR-765 1 0 0
chr17:81843599|81843890 hsa-miR-665 1 0 0
chr17:81843599|81843890 hsa-miR-1275 1 0 0
chr17:81843599|81843890 hsa-miR-3154 1 0 0
chr17:81843599|81843890 hsa-miR-1193 1 0 0
chr17:81843599|81843890 hsa-miR-3185 1 0 0
chr17:81843599|81843890 hsa-miR-4261 0 1 0
chr17:81843599|81843890 hsa-miR-3916 1 0 0
chr17:81843599|81843890 hsa-miR-4428 1 0 0
chr17:81843599|81843890 hsa-miR-3135b 1 0 0
chr17:81843599|81843890 hsa-miR-4463 1 0 0
chr17:81843599|81843890 hsa-miR-4467 1 0 0
chr17:81843599|81843890 hsa-miR-4468 1 1 0
chr17:81843599|81843890 hsa-miR-4476 1 0 0
chr17:81843599|81843890 hsa-miR-4508 1 0 0
chr17:81843599|81843890 hsa-miR-4516 1 0 0
chr17:81843599|81843890 hsa-miR-4533 1 0 0
chr17:81843599|81843890 hsa-miR-1587 0 1 0
chr17:81843599|81843890 hsa-miR-4651 1 0 0
chr17:81843599|81843890 hsa-miR-4689 1 0 0
chr17:81843599|81843890 hsa-miR-4706 1 0 0
chr17:81843599|81843890 hsa-miR-4739 0 1 0
chr17:81843599|81843890 hsa-miR-4741 1 1 0
chr17:81843599|81843890 hsa-miR-5572 1 0 0
chr17:81843599|81843890 hsa-miR-5787 1 0 0
chr17:81843599|81843890 hsa-miR-6090 1 0 0
chr17:81843599|81843890 hsa-miR-6125 1 0 0
chr17:81843599|81843890 hsa-miR-6127 0 1 0
chr17:81843599|81843890 hsa-miR-6133 0 1 0
chr17:81843599|81843890 hsa-miR-6165 1 0 0
chr17:81843599|81843890 hsa-miR-6863 1 0 0
chr17:81843599|81843890 hsa-miR-7515 1 0 0
chr17:81843599|81843890 hsa-miR-8072 1 0 0
chr17:81843599|81843890 hsa-miR-8085 1 0 0
chr17:81843599|81843890 hsa-miR-9986 0 1 0
chr17:81843599|81843890 hsa-miR-12118 1 1 0
chr17:81843599|81843890 hsa-miR-12120 1 0 0
chr17:81843599|81843890 hsa-miR-6747-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6765-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6825-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6799-5p 1 0 0
chr17:81843599|81843890 hsa-miR-8071 1 0 0
chr17:81843599|81843890 hsa-miR-6515-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6089 1 0 0
chr17:81843599|81843890 hsa-miR-4695-5p 1 0 0
chr17:81843599|81843890 hsa-miR-197-5p 1 0 0
chr17:81843599|81843890 hsa-miR-3180-3p 1 0 0
chr17:81843599|81843890 hsa-miR-6829-5p 0 1 0
chr17:81843599|81843890 hsa-miR-6732-5p 1 0 0
chr17:81843599|81843890 hsa-miR-656-5p 0 1 0
chr17:81843599|81843890 hsa-miR-6881-5p 1 0 0
chr17:81843599|81843890 hsa-miR-2467-3p 1 0 0
chr17:81843599|81843890 hsa-miR-6782-5p 1 1 0
chr17:81843599|81843890 hsa-miR-6835-5p 1 0 0
chr17:81843599|81843890 hsa-miR-1229-5p 1 0 0
chr17:81843599|81843890 hsa-miR-4640-5p 1 0 0
chr17:81843599|81843890 hsa-miR-1908-5p 1 0 0
chr17:81843599|81843890 hsa-miR-4690-5p 1 0 0
chr17:81843599|81843890 hsa-miR-92b-5p 1 0 0
chr17:81843599|81843890 hsa-miR-4787-5p 1 1 0
chr17:81843599|81843890 hsa-miR-149-3p 0 1 0
chr17:81843599|81843890 hsa-miR-6830-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6871-3p 1 0 0
chr17:81843599|81843890 hsa-miR-4750-5p 1 0 0
chr17:81843599|81843890 hsa-miR-214-3p 1 0 0
chr17:81843599|81843890 hsa-miR-518c-5p 0 1 0
chr17:81843599|81843890 hsa-miR-514a-5p 0 1 0
chr17:81843599|81843890 hsa-miR-10400-5p 1 0 0
chr17:81843599|81843890 hsa-miR-1207-5p 1 0 0
chr17:81843599|81843890 hsa-miR-1233-5p 1 0 0
chr17:81843599|81843890 hsa-miR-4763-3p 1 0 0
chr17:81843599|81843890 hsa-miR-6778-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6787-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6812-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6865-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6870-5p 1 0 0
chr17:81843599|81843890 hsa-miR-1343-5p 1 0 0
chr17:81843599|81843890 hsa-miR-5001-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6752-5p 1 1 0
chr17:81843599|81843890 hsa-miR-6756-5p 1 1 0
chr17:81843599|81843890 hsa-miR-6803-5p 1 1 0
chr17:81843599|81843890 hsa-miR-7110-5p 1 1 0
chr17:81843599|81843890 hsa-miR-10401-5p 1 0 0
chr17:81843599|81843890 hsa-miR-1249-5p 0 1 0
chr17:81843599|81843890 hsa-miR-6722-3p 1 0 0
chr17:81843599|81843890 hsa-miR-6751-5p 1 1 0
chr17:81843599|81843890 hsa-miR-6774-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6780a-5p 0 1 0
chr17:81843599|81843890 hsa-miR-6797-5p 1 1 0
chr17:81843599|81843890 hsa-miR-3620-5p 0 1 0
chr17:81843599|81843890 hsa-miR-4728-5p 1 1 0
chr17:81843599|81843890 hsa-miR-5196-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6780b-5p 1 0 0
chr17:81843599|81843890 hsa-miR-10396a-5p 1 0 0
chr17:81843599|81843890 hsa-miR-10396b-5p 1 0 0
chr17:81843599|81843890 hsa-miR-328-5p 1 1 0
chr17:81843599|81843890 hsa-miR-4649-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6795-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6887-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6831-5p 1 0 0
chr17:81843599|81843890 hsa-miR-1910-3p 1 0 0
chr17:81843599|81843890 hsa-miR-6511a-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6731-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6758-5p 1 0 0
chr17:81843599|81843890 hsa-miR-6891-5p 1 0 0
chr17:81843599|81843890 hsa-miR-4472 1 0 0
chr17:81843599|81843890 hsa-miR-6750-5p 1 0 0
chr17:81843599|81843890 hsa-miR-4756-5p 0 1 0
chr17:81843599|81843890 hsa-miR-20b-5p 0 1 0
chr17:81843599|81843890 hsa-miR-548t-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:81843599|81843890
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MSLSRVLATVFGVSLPPSRGRFLLFLKIPSVGFLDIFRHQGICSTLAR
Nucleotide Sequence ATGAGTCTGTCCAGAGTGCTTGCTACCGTGTTCGGAGTCTCGCTGCCTCCCTCCCGCGGGAGGTTTCTCCTCTTTTTGAAAATTCCGTCTGTGGGATTTTTAGACATTTTTCGACATCAGGGTATTTGTTCCACCTTGGCCAGG
CircID chr17:81843599|81843890
ORF Type ORF2
Protein Length 73
Nucleotide Length 219
Protein Sequence MERDPSPGSPPWWGLFPETMMYFFIHESVQSACYRVRSLAASLPREVSPLFENSVCGIFRHFSTSGYLFHLGQ
Nucleotide Sequence TTGGAAAGGGATCCATCTCCAGGCAGCCCACCCTGGTGGGGCTTGTTTCCTGAAACCATGATGTACTTTTTCATACATGAGTCTGTCCAGAGTGCTTGCTACCGTGTTCGGAGTCTCGCTGCCTCCCTCCCGCGGGAGGTTTCTCCTCTTTTTGAAAATTCCGTCTGTGGGATTTTTAGACATTTTTCGACATCAGGGTATTTGTTCCACCTTGGCCAG
CircID chr17:81843599|81843890
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MKKYIMVSGNKPHQGGLPGDGSLSKNRKAEGRDGGERTVCRGEVSLQR
Nucleotide Sequence ATGAAAAAGTACATCATGGTTTCAGGAAACAAGCCCCACCAGGGTGGGCTGCCTGGAGATGGATCCCTTTCCAAAAACCGAAAAGCAGAAGGAAGAGACGGGGGTGAACGGACGGTGTGTAGGGGTGAGGTGTCACTTCAGAGA
CircID chr17:81843599|81843890
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MEMDPFPKTEKQKEETGVNGRCVGVRCHFRE
Nucleotide Sequence CTGGAGATGGATCCCTTTCCAAAAACCGAAAAGCAGAAGGAAGAGACGGGGGTGAACGGACGGTGTGTAGGGGTGAGGTGTCACTTCAGAGAG
CircID chr17:81843599|81843890
ORF Type ORF5
Protein Length 71
Nucleotide Length 216
Protein Sequence MSKNPTDGIFKKRRNLPREGGSETPNTVASTLDRLMYEKVHHGFRKQAPPGWAAWRWIPFQKPKSRRKRRG
Nucleotide Sequence ATGTCTAAAAATCCCACAGACGGAATTTTCAAAAAGAGGAGAAACCTCCCGCGGGAGGGAGGCAGCGAGACTCCGAACACGGTAGCAAGCACTCTGGACAGACTCATGTATGAAAAAGTACATCATGGTTTCAGGAAACAAGCCCCACCAGGGTGGGCTGCCTGGAGATGGATCCCTTTCCAAAAACCGAAAAGCAGAAGGAAGAGACGGGGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab