CircRNA Information

General Information
circRNA Basic Information
CircID chr17:82028397|82028683
Strand +
CircType exon
Host Gene ENSG00000169683.6;
Algorism CIRI2;
Sequence CTCCTTGATGCGCAGGCTTTCGGAGTCCTCCAGGCTCTGTCTGCATCTTCTCTTCTCCATGTCCAGGCGCTCTGGAAGCCCAGGGTGGGCAGAGTATGCGTGAGCATCCCCTGGGGGCCCCCGTCCCCCGGTGCCCATCCCCAGGCCCCTCCACAGCAGGCCTGCCCGTGCCCACCCTCGGCCTGGATGGCCCGCATCTTCAGCTCAGCTGACATGCTGGTCATCTCCTGCCTGGTCTGGAACAGCTGCTCCTGCTGACACCTGAACTTCCGCTCCAACTCGTCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:82028397|82028683 hsa-miR-214-5p 0 0 1
chr17:82028397|82028683 hsa-miR-214-3p 0 0 1
chr17:82028397|82028683 hsa-miR-143-5p 0 0 1
chr17:82028397|82028683 hsa-miR-143-3p 0 0 1
chr17:82028397|82028683 hsa-miR-370-5p 0 0 1
chr17:82028397|82028683 hsa-miR-370-3p 0 0 1
chr17:82028397|82028683 hsa-miR-558 0 0 1
chr17:82028397|82028683 hsa-miR-564 0 0 1
chr17:82028397|82028683 hsa-miR-571 0 0 1
chr17:82028397|82028683 hsa-miR-596 0 0 1
chr17:82028397|82028683 hsa-miR-634 0 0 1
chr17:82028397|82028683 hsa-miR-646 0 1 1
chr17:82028397|82028683 hsa-miR-661 1 1 1
chr17:82028397|82028683 hsa-miR-765 0 0 1
chr17:82028397|82028683 hsa-miR-541-5p 0 0 1
chr17:82028397|82028683 hsa-miR-541-3p 0 0 1
chr17:82028397|82028683 hsa-miR-922 0 0 1
chr17:82028397|82028683 hsa-miR-940 0 0 1
chr17:82028397|82028683 hsa-miR-1178-5p 0 0 1
chr17:82028397|82028683 hsa-miR-1178-3p 0 0 1
chr17:82028397|82028683 hsa-miR-1253 0 1 1
chr17:82028397|82028683 hsa-miR-1324 0 0 1
chr17:82028397|82028683 hsa-miR-125a-3p 0 0 1
chr17:82028397|82028683 hsa-miR-296-5p 0 0 1
chr17:82028397|82028683 hsa-miR-423-5p 0 0 1
chr17:82028397|82028683 hsa-miR-654-5p 0 0 1
chr17:82028397|82028683 hsa-miR-525-5p 0 0 1
chr17:82028397|82028683 hsa-miR-339-3p 1 1 1
chr17:82028397|82028683 hsa-miR-361-3p 0 1 1
chr17:82028397|82028683 hsa-miR-1207-3p 0 0 1
chr17:82028397|82028683 hsa-miR-338-3p 0 1 1
chr17:82028397|82028683 hsa-miR-324-3p 0 0 1
chr17:82028397|82028683 hsa-miR-520a-5p 0 0 1
chr17:82028397|82028683 hsa-miR-1254 0 0 1
chr17:82028397|82028683 hsa-miR-608 1 0 0
chr17:82028397|82028683 hsa-miR-612 1 0 0
chr17:82028397|82028683 hsa-miR-637 1 0 0
chr17:82028397|82028683 hsa-miR-663a 1 0 0
chr17:82028397|82028683 hsa-miR-762 1 0 0
chr17:82028397|82028683 hsa-miR-761 0 1 0
chr17:82028397|82028683 hsa-miR-1203 1 0 0
chr17:82028397|82028683 hsa-miR-1538 1 0 0
chr17:82028397|82028683 hsa-miR-1539 0 1 0
chr17:82028397|82028683 hsa-miR-2861 1 1 0
chr17:82028397|82028683 hsa-miR-3132 1 0 0
chr17:82028397|82028683 hsa-miR-378b 1 0 0
chr17:82028397|82028683 hsa-miR-3141 1 0 0
chr17:82028397|82028683 hsa-miR-3166 0 1 0
chr17:82028397|82028683 hsa-miR-3196 1 0 0
chr17:82028397|82028683 hsa-miR-378c 1 0 0
chr17:82028397|82028683 hsa-miR-4254 0 1 0
chr17:82028397|82028683 hsa-miR-4271 0 1 0
chr17:82028397|82028683 hsa-miR-4291 0 1 0
chr17:82028397|82028683 hsa-miR-378f 1 0 0
chr17:82028397|82028683 hsa-miR-378g 1 0 0
chr17:82028397|82028683 hsa-miR-4488 1 0 0
chr17:82028397|82028683 hsa-miR-4514 0 1 0
chr17:82028397|82028683 hsa-miR-4525 0 1 0
chr17:82028397|82028683 hsa-miR-378i 1 0 0
chr17:82028397|82028683 hsa-miR-4538 1 0 0
chr17:82028397|82028683 hsa-miR-4644 0 1 0
chr17:82028397|82028683 hsa-miR-4651 1 0 0
chr17:82028397|82028683 hsa-miR-4663 0 1 0
chr17:82028397|82028683 hsa-miR-4673 1 1 0
chr17:82028397|82028683 hsa-miR-4688 1 0 0
chr17:82028397|82028683 hsa-miR-4692 0 1 0
chr17:82028397|82028683 hsa-miR-4706 1 0 0
chr17:82028397|82028683 hsa-miR-4739 1 0 0
chr17:82028397|82028683 hsa-miR-5194 1 1 0
chr17:82028397|82028683 hsa-miR-6081 1 1 0
chr17:82028397|82028683 hsa-miR-6085 1 0 0
chr17:82028397|82028683 hsa-miR-6086 1 0 0
chr17:82028397|82028683 hsa-miR-6125 1 0 0
chr17:82028397|82028683 hsa-miR-6165 0 1 0
chr17:82028397|82028683 hsa-miR-6860 1 0 0
chr17:82028397|82028683 hsa-miR-8089 1 1 0
chr17:82028397|82028683 hsa-miR-6825-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6857-5p 0 1 0
chr17:82028397|82028683 hsa-miR-1972 0 1 0
chr17:82028397|82028683 hsa-miR-4768-3p 0 1 0
chr17:82028397|82028683 hsa-miR-7114-5p 1 1 0
chr17:82028397|82028683 hsa-miR-6089 0 1 0
chr17:82028397|82028683 hsa-miR-6757-5p 1 0 0
chr17:82028397|82028683 hsa-miR-4722-5p 1 1 0
chr17:82028397|82028683 hsa-miR-3622b-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6721-5p 1 1 0
chr17:82028397|82028683 hsa-miR-1292-5p 1 0 0
chr17:82028397|82028683 hsa-miR-3180-3p 1 1 0
chr17:82028397|82028683 hsa-miR-6829-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6732-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6798-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6760-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6782-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6514-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6874-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6888-5p 0 1 0
chr17:82028397|82028683 hsa-miR-6786-5p 1 0 0
chr17:82028397|82028683 hsa-miR-939-3p 0 1 0
chr17:82028397|82028683 hsa-miR-6753-5p 1 0 0
chr17:82028397|82028683 hsa-miR-1228-5p 1 0 0
chr17:82028397|82028683 hsa-miR-296-3p 1 0 0
chr17:82028397|82028683 hsa-miR-877-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6749-5p 1 1 0
chr17:82028397|82028683 hsa-miR-4787-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6824-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6800-5p 1 0 0
chr17:82028397|82028683 hsa-miR-550b-2-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6877-5p 1 0 0
chr17:82028397|82028683 hsa-miR-7112-5p 1 1 0
chr17:82028397|82028683 hsa-miR-490-3p 1 0 0
chr17:82028397|82028683 hsa-miR-3191-3p 0 1 0
chr17:82028397|82028683 hsa-miR-1225-5p 1 0 0
chr17:82028397|82028683 hsa-miR-2115-5p 0 1 0
chr17:82028397|82028683 hsa-miR-6720-3p 1 0 0
chr17:82028397|82028683 hsa-miR-6508-3p 0 1 0
chr17:82028397|82028683 hsa-miR-4529-5p 0 1 0
chr17:82028397|82028683 hsa-miR-2277-5p 1 0 0
chr17:82028397|82028683 hsa-miR-181d-3p 0 1 0
chr17:82028397|82028683 hsa-miR-1207-5p 1 0 0
chr17:82028397|82028683 hsa-miR-4763-3p 1 0 0
chr17:82028397|82028683 hsa-miR-6787-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6816-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6775-5p 1 1 0
chr17:82028397|82028683 hsa-miR-1343-5p 1 0 0
chr17:82028397|82028683 hsa-miR-3180 0 1 0
chr17:82028397|82028683 hsa-miR-5001-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6743-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6752-5p 1 1 0
chr17:82028397|82028683 hsa-miR-6756-5p 1 1 0
chr17:82028397|82028683 hsa-miR-6769a-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6803-5p 1 1 0
chr17:82028397|82028683 hsa-miR-7107-5p 1 1 0
chr17:82028397|82028683 hsa-miR-1249-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6774-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6779-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6808-5p 0 1 0
chr17:82028397|82028683 hsa-miR-6879-5p 1 0 0
chr17:82028397|82028683 hsa-miR-3620-5p 1 0 0
chr17:82028397|82028683 hsa-miR-5189-5p 1 1 0
chr17:82028397|82028683 hsa-miR-10396b-5p 1 0 0
chr17:82028397|82028683 hsa-miR-1909-3p 1 0 0
chr17:82028397|82028683 hsa-miR-328-5p 1 1 0
chr17:82028397|82028683 hsa-miR-4649-5p 1 0 0
chr17:82028397|82028683 hsa-miR-4685-5p 1 1 0
chr17:82028397|82028683 hsa-miR-6729-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6848-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6858-5p 1 0 0
chr17:82028397|82028683 hsa-miR-1238-5p 1 0 0
chr17:82028397|82028683 hsa-miR-4758-5p 1 0 0
chr17:82028397|82028683 hsa-miR-10394-3p 1 0 0
chr17:82028397|82028683 hsa-miR-1914-3p 1 0 0
chr17:82028397|82028683 hsa-miR-4665-5p 0 1 0
chr17:82028397|82028683 hsa-miR-3116 1 1 0
chr17:82028397|82028683 hsa-miR-4700-5p 0 1 0
chr17:82028397|82028683 hsa-miR-378a-3p 1 0 0
chr17:82028397|82028683 hsa-miR-3184-5p 0 1 0
chr17:82028397|82028683 hsa-miR-6724-5p 1 0 0
chr17:82028397|82028683 hsa-miR-6791-5p 1 1 0
chr17:82028397|82028683 hsa-miR-550a-3-5p 1 0 0
chr17:82028397|82028683 hsa-miR-550a-5p 1 0 0
chr17:82028397|82028683 hsa-miR-33b-3p 1 0 0
chr17:82028397|82028683 hsa-miR-3619-5p 0 1 0
chr17:82028397|82028683 hsa-miR-6764-5p 0 1 0
chr17:82028397|82028683 hsa-miR-378d 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:82028397|82028683
ORF Type ORF1
Protein Length 73
Nucleotide Length 222
Protein Sequence MSASSLLHVQALWKPRVGRVCVSIPWGPPSPGAHPQAPPQQACPCPPSAWMARIFSSADMLVISCLVWNSCSC
Nucleotide Sequence CTGTCTGCATCTTCTCTTCTCCATGTCCAGGCGCTCTGGAAGCCCAGGGTGGGCAGAGTATGCGTGAGCATCCCCTGGGGGCCCCCGTCCCCCGGTGCCCATCCCCAGGCCCCTCCACAGCAGGCCTGCCCGTGCCCACCCTCGGCCTGGATGGCCCGCATCTTCAGCTCAGCTGACATGCTGGTCATCTCCTGCCTGGTCTGGAACAGCTGCTCCTGCTGA
CircID chr17:82028397|82028683
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MMRRLSESSRLCLHLLFSMSRRSGSPGWAEYA
Nucleotide Sequence TTGATGCGCAGGCTTTCGGAGTCCTCCAGGCTCTGTCTGCATCTTCTCTTCTCCATGTCCAGGCGCTCTGGAAGCCCAGGGTGGGCAGAGTATGCGTGA
CircID chr17:82028397|82028683
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence MEAQGGQSMREHPLGAPVPRCPSPGPSTAGLPVPTLGLDGPHLQLS
Nucleotide Sequence CTGGAAGCCCAGGGTGGGCAGAGTATGCGTGAGCATCCCCTGGGGGCCCCCGTCCCCCGGTGCCCATCCCCAGGCCCCTCCACAGCAGGCCTGCCCGTGCCCACCCTCGGCCTGGATGGCCCGCATCTTCAGCTCAGCTGA
CircID chr17:82028397|82028683
ORF Type ORF4
Protein Length 92
Nucleotide Length 276
Protein Sequence MERKFRCQQEQLFQTRQEMTSMSAELKMRAIQAEGGHGQACCGGAWGWAPGDGGPQGMLTHTLPTLGFQSAWTWRREDADRAWRTPKACASR
Nucleotide Sequence TTGGAGCGGAAGTTCAGGTGTCAGCAGGAGCAGCTGTTCCAGACCAGGCAGGAGATGACCAGCATGTCAGCTGAGCTGAAGATGCGGGCCATCCAGGCCGAGGGTGGGCACGGGCAGGCCTGCTGTGGAGGGGCCTGGGGATGGGCACCGGGGGACGGGGGCCCCCAGGGGATGCTCACGCATACTCTGCCCACCCTGGGCTTCCAGAGCGCCTGGACATGGAGAAGAGAAGATGCAGACAGAGCCTGGAGGACTCCGAAAGCCTGCGCATCAAGG
CircID chr17:82028397|82028683
ORF Type ORF5
Protein Length 53
Nucleotide Length 159
Protein Sequence MLWRGLGMGTGGRGPPGDAHAYSAHPGLPERLDMEKRRCRQSLEDSESLRIKE
Nucleotide Sequence CTGCTGTGGAGGGGCCTGGGGATGGGCACCGGGGGACGGGGGCCCCCAGGGGATGCTCACGCATACTCTGCCCACCCTGGGCTTCCAGAGCGCCTGGACATGGAGAAGAGAAGATGCAGACAGAGCCTGGAGGACTCCGAAAGCCTGCGCATCAAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab