CircRNA Information

General Information
circRNA Basic Information
CircID chr17:82054721|82054930
Strand -
CircType exon
Host Gene ENSG00000169727.11;
Algorism CIRI2;
Sequence CTCAGCGTCAGCGTCTACTTGCAGAATTGGTCTCATGTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:82054721|82054930 hsa-miR-631 0 0 1
chr17:82054721|82054930 hsa-miR-411-5p 0 0 1
chr17:82054721|82054930 hsa-miR-411-3p 0 0 1
chr17:82054721|82054930 hsa-miR-940 0 0 1
chr17:82054721|82054930 hsa-miR-1304-5p 0 0 1
chr17:82054721|82054930 hsa-miR-1304-3p 0 0 1
chr17:82054721|82054930 hsa-miR-1827 0 0 1
chr17:82054721|82054930 hsa-miR-1225-3p 1 0 1
chr17:82054721|82054930 hsa-miR-769-5p 0 0 1
chr17:82054721|82054930 hsa-miR-628-5p 0 0 1
chr17:82054721|82054930 hsa-miR-199b-3p 0 0 1
chr17:82054721|82054930 hsa-miR-199a-3p 0 0 1
chr17:82054721|82054930 hsa-miR-1233 0 0 1
chr17:82054721|82054930 hsa-miR-138 0 0 1
chr17:82054721|82054930 hsa-miR-544 0 0 1
chr17:82054721|82054930 hsa-miR-663 0 0 1
chr17:82054721|82054930 hsa-miR-661 1 0 0
chr17:82054721|82054930 hsa-miR-663a 0 1 0
chr17:82054721|82054930 hsa-miR-663b 1 1 0
chr17:82054721|82054930 hsa-miR-1538 1 1 0
chr17:82054721|82054930 hsa-miR-548q 0 1 0
chr17:82054721|82054930 hsa-miR-3197 1 0 0
chr17:82054721|82054930 hsa-miR-4299 1 0 0
chr17:82054721|82054930 hsa-miR-4260 1 0 0
chr17:82054721|82054930 hsa-miR-4449 1 1 0
chr17:82054721|82054930 hsa-miR-4767 1 1 0
chr17:82054721|82054930 hsa-miR-6088 1 0 0
chr17:82054721|82054930 hsa-miR-9718 0 1 0
chr17:82054721|82054930 hsa-miR-9899 1 1 0
chr17:82054721|82054930 hsa-miR-138-5p 0 1 0
chr17:82054721|82054930 hsa-miR-4747-3p 1 0 0
chr17:82054721|82054930 hsa-miR-1247-3p 0 1 0
chr17:82054721|82054930 hsa-miR-4665-3p 1 0 0
chr17:82054721|82054930 hsa-miR-6765-5p 1 0 0
chr17:82054721|82054930 hsa-miR-4786-5p 1 1 0
chr17:82054721|82054930 hsa-miR-6744-5p 1 0 0
chr17:82054721|82054930 hsa-miR-6727-5p 1 0 0
chr17:82054721|82054930 hsa-miR-4655-5p 1 0 0
chr17:82054721|82054930 hsa-miR-3189-5p 1 0 0
chr17:82054721|82054930 hsa-miR-6882-3p 0 1 0
chr17:82054721|82054930 hsa-miR-1226-5p 1 0 0
chr17:82054721|82054930 hsa-miR-7108-3p 0 1 0
chr17:82054721|82054930 hsa-miR-4707-3p 1 1 0
chr17:82054721|82054930 hsa-miR-4640-5p 1 0 0
chr17:82054721|82054930 hsa-miR-485-5p 1 0 0
chr17:82054721|82054930 hsa-miR-6749-5p 1 0 0
chr17:82054721|82054930 hsa-miR-2276-3p 0 1 0
chr17:82054721|82054930 hsa-miR-4758-3p 1 0 0
chr17:82054721|82054930 hsa-miR-6793-3p 1 0 0
chr17:82054721|82054930 hsa-miR-3940-3p 0 1 0
chr17:82054721|82054930 hsa-miR-891a-3p 1 0 0
chr17:82054721|82054930 hsa-miR-6789-3p 0 1 0
chr17:82054721|82054930 hsa-miR-4716-5p 0 1 0
chr17:82054721|82054930 hsa-miR-6787-5p 0 1 0
chr17:82054721|82054930 hsa-miR-6752-5p 1 1 0
chr17:82054721|82054930 hsa-miR-10396b-5p 0 1 0
chr17:82054721|82054930 hsa-miR-1237-5p 0 1 0
chr17:82054721|82054930 hsa-miR-328-5p 0 1 0
chr17:82054721|82054930 hsa-miR-4745-3p 0 1 0
chr17:82054721|82054930 hsa-miR-675-5p 1 0 0
chr17:82054721|82054930 hsa-miR-4697-5p 0 1 0
chr17:82054721|82054930 hsa-miR-6885-5p 0 1 0
chr17:82054721|82054930 hsa-miR-6511b-5p 1 0 0
chr17:82054721|82054930 hsa-miR-4665-5p 1 0 0
chr17:82054721|82054930 hsa-miR-4646-5p 0 1 0
chr17:82054721|82054930 hsa-miR-6724-5p 1 0 0
chr17:82054721|82054930 hsa-miR-6529-5p 1 0 0
chr17:82054721|82054930 hsa-miR-5195-3p 1 0 0
chr17:82054721|82054930 hsa-miR-3129-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:82054721|82054930
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MCLNVIKVGLPRRAGVGSMAGPLGRPGSLGSAPPRQVSVYLQNWSHV
Nucleotide Sequence ATGTGCCTCAATGTCATCAAGGTCGGCCTGCCTCGGCGGGCGGGGGTGGGCAGCATGGCTGGGCCATTGGGGCGCCCGGGCTCACTTGGCTCTGCGCCCCCCCGCCAGGTCAGCGTCTACTTGCAGAATTGGTCTCATGTG
CircID chr17:82054721|82054930
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MSSRSACLGGRGWAAWLGHWGARAHLALRPPARSASTCRIGLM
Nucleotide Sequence ATGTCATCAAGGTCGGCCTGCCTCGGCGGGCGGGGGTGGGCAGCATGGCTGGGCCATTGGGGCGCCCGGGCTCACTTGGCTCTGCGCCCCCCCGCCAGGTCAGCGTCTACTTGCAGAATTGGTCTCATG
CircID chr17:82054721|82054930
ORF Type ORF3
Protein Length 56
Nucleotide Length 168
Protein Sequence MHQRQTRHQHVPQCHQGRPASAGGGGQHGWAIGAPGLTWLCAPPPGQRLLAELVSC
Nucleotide Sequence CTGCACCAGCGCCAAACACGTCATCAACATGTGCCTCAATGTCATCAAGGTCGGCCTGCCTCGGCGGGCGGGGGTGGGCAGCATGGCTGGGCCATTGGGGCGCCCGGGCTCACTTGGCTCTGCGCCCCCCCGCCAGGTCAGCGTCTACTTGCAGAATTGGTCTCATGT
CircID chr17:82054721|82054930
ORF Type ORF4
Protein Length 47
Nucleotide Length 144
Protein Sequence MTWRGGAEPSEPGRPNGPAMLPTPARRGRPTLMTLRHMLMTCLALVQ
Nucleotide Sequence CTGACCTGGCGGGGGGGCGCAGAGCCAAGTGAGCCCGGGCGCCCCAATGGCCCAGCCATGCTGCCCACCCCCGCCCGCCGAGGCAGGCCGACCTTGATGACATTGAGGCACATGTTGATGACGTGTTTGGCGCTGGTGCAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab