CircRNA Information

General Information
circRNA Basic Information
CircID chr17:82079473|82079574
Strand -
CircType exon
Host Gene ENSG00000169710.6;
Algorism CIRI2;
Sequence GCAGCTTGTAGTAGAAGGACCGGGCCGCAAAGCTCAGCTCCTGGCGGTCCAGGCCCTGGTGGCTCTTGATGATCAGGTCCACGGCGGCTGCCACACGCTCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:82079473|82079574 hsa-miR-335-5p 0 0 1
chr17:82079473|82079574 hsa-miR-335-3p 0 0 1
chr17:82079473|82079574 hsa-miR-492 0 0 1
chr17:82079473|82079574 hsa-miR-708-5p 0 0 1
chr17:82079473|82079574 hsa-miR-708-3p 0 0 1
chr17:82079473|82079574 hsa-miR-665 1 0 1
chr17:82079473|82079574 hsa-miR-1237-5p 0 0 1
chr17:82079473|82079574 hsa-miR-1237-3p 0 0 1
chr17:82079473|82079574 hsa-miR-1248 0 0 1
chr17:82079473|82079574 hsa-miR-885-3p 0 0 1
chr17:82079473|82079574 hsa-miR-28-5p 0 0 1
chr17:82079473|82079574 hsa-miR-644 0 0 1
chr17:82079473|82079574 hsa-miR-1254 0 0 1
chr17:82079473|82079574 hsa-miR-638 1 0 0
chr17:82079473|82079574 hsa-miR-762 1 0 0
chr17:82079473|82079574 hsa-miR-4538 1 0 0
chr17:82079473|82079574 hsa-miR-4767 1 0 0
chr17:82079473|82079574 hsa-miR-6749-5p 1 0 0
chr17:82079473|82079574 hsa-miR-4763-3p 1 0 0
chr17:82079473|82079574 hsa-miR-5001-5p 1 0 0
chr17:82079473|82079574 hsa-miR-4685-5p 1 0 0
chr17:82079473|82079574 hsa-miR-6846-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:82079473|82079574
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MIIKSHQGLDRQELSFAARSFYYKL
Nucleotide Sequence CTGATCATCAAGAGCCACCAGGGCCTGGACCGCCAGGAGCTGAGCTTTGCGGCCCGGTCCTTCTACTACAAGCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab