CircRNA Information

General Information
circRNA Basic Information
CircID chr17:82082632|82082974
Strand -
CircType exon
Host Gene ENSG00000169710.6;
Algorism CIRI2;
Sequence CTGTACGCCCTGGCGCCTCCACCGGCGGACCTGCTTGGCCTGGTAGCCTGCGGGACACAGGACTGTGGGCTGGACTGGGCCAGGGTACGGTCTCTTCCCTACACGCCGGGCTGGGGAAGTGGGGAGCAGCCGCAGAGCCCCATCCAGCAAGCCCCCCACAAGATGGAGGGGGACAGACCCCAGGCACCGTGACAGCCCACAATGGTGGGCTGCAGAGAAGGGCTCAGGGGCCCGGGGCTGTGCCTGGCCCAGGCTGGTCCACAAGCACCCCTGCCGACTCACCTGTCCGGATCCCGGAGCGAGAAGTCAACACGAGCTTCTGCACCCCACGCTGTATCAGCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:82082632|82082974 hsa-miR-10a-5p 0 0 1
chr17:82082632|82082974 hsa-miR-10a-3p 0 0 1
chr17:82082632|82082974 hsa-miR-10b-5p 0 0 1
chr17:82082632|82082974 hsa-miR-10b-3p 0 0 1
chr17:82082632|82082974 hsa-miR-552-5p 0 0 1
chr17:82082632|82082974 hsa-miR-552-3p 0 0 1
chr17:82082632|82082974 hsa-miR-581 0 0 1
chr17:82082632|82082974 hsa-miR-585-5p 0 0 1
chr17:82082632|82082974 hsa-miR-585-3p 0 0 1
chr17:82082632|82082974 hsa-miR-608 1 0 1
chr17:82082632|82082974 hsa-miR-617 0 0 1
chr17:82082632|82082974 hsa-miR-636 0 1 1
chr17:82082632|82082974 hsa-miR-650 0 0 1
chr17:82082632|82082974 hsa-miR-661 0 1 1
chr17:82082632|82082974 hsa-miR-298 0 1 1
chr17:82082632|82082974 hsa-miR-760 0 1 1
chr17:82082632|82082974 hsa-miR-942-5p 0 0 1
chr17:82082632|82082974 hsa-miR-942-3p 0 0 1
chr17:82082632|82082974 hsa-miR-1205 0 0 1
chr17:82082632|82082974 hsa-miR-1287-5p 0 0 1
chr17:82082632|82082974 hsa-miR-1287-3p 0 0 1
chr17:82082632|82082974 hsa-miR-125a-3p 1 1 1
chr17:82082632|82082974 hsa-miR-1225-3p 0 0 1
chr17:82082632|82082974 hsa-miR-296-5p 0 0 1
chr17:82082632|82082974 hsa-miR-491-5p 0 0 1
chr17:82082632|82082974 hsa-miR-615-5p 0 0 1
chr17:82082632|82082974 hsa-miR-1184 0 1 1
chr17:82082632|82082974 hsa-miR-1207-5p 1 1 1
chr17:82082632|82082974 hsa-miR-342-5p 0 1 1
chr17:82082632|82082974 hsa-miR-125a-5p 0 1 1
chr17:82082632|82082974 hsa-miR-455-3p 0 0 1
chr17:82082632|82082974 hsa-miR-1233 0 0 1
chr17:82082632|82082974 hsa-miR-125b 0 0 1
chr17:82082632|82082974 hsa-miR-550 0 0 1
chr17:82082632|82082974 hsa-miR-1254 0 0 1
chr17:82082632|82082974 hsa-miR-129-3p 0 0 1
chr17:82082632|82082974 hsa-miR-720 0 0 1
chr17:82082632|82082974 hsa-miR-612 1 0 0
chr17:82082632|82082974 hsa-miR-638 1 0 0
chr17:82082632|82082974 hsa-miR-647 0 1 0
chr17:82082632|82082974 hsa-miR-663a 1 0 0
chr17:82082632|82082974 hsa-miR-1200 0 1 0
chr17:82082632|82082974 hsa-miR-1268a 1 0 0
chr17:82082632|82082974 hsa-miR-1469 1 0 0
chr17:82082632|82082974 hsa-miR-3196 1 0 0
chr17:82082632|82082974 hsa-miR-3197 0 1 0
chr17:82082632|82082974 hsa-miR-4298 1 0 0
chr17:82082632|82082974 hsa-miR-4322 0 1 0
chr17:82082632|82082974 hsa-miR-4259 1 0 0
chr17:82082632|82082974 hsa-miR-4265 0 1 0
chr17:82082632|82082974 hsa-miR-4269 0 1 0
chr17:82082632|82082974 hsa-miR-1268b 1 0 0
chr17:82082632|82082974 hsa-miR-4440 1 0 0
chr17:82082632|82082974 hsa-miR-4442 0 1 0
chr17:82082632|82082974 hsa-miR-4449 1 0 0
chr17:82082632|82082974 hsa-miR-4540 0 1 0
chr17:82082632|82082974 hsa-miR-4651 1 0 0
chr17:82082632|82082974 hsa-miR-4673 0 1 0
chr17:82082632|82082974 hsa-miR-4710 1 0 0
chr17:82082632|82082974 hsa-miR-4741 1 1 0
chr17:82082632|82082974 hsa-miR-4785 1 0 0
chr17:82082632|82082974 hsa-miR-5572 1 1 0
chr17:82082632|82082974 hsa-miR-5685 0 1 0
chr17:82082632|82082974 hsa-miR-6077 0 1 0
chr17:82082632|82082974 hsa-miR-8077 1 0 0
chr17:82082632|82082974 hsa-miR-9500 0 1 0
chr17:82082632|82082974 hsa-miR-12114 1 0 0
chr17:82082632|82082974 hsa-miR-92a-2-5p 0 1 0
chr17:82082632|82082974 hsa-miR-7155-5p 0 1 0
chr17:82082632|82082974 hsa-miR-3194-3p 0 1 0
chr17:82082632|82082974 hsa-miR-6747-5p 0 1 0
chr17:82082632|82082974 hsa-miR-6765-5p 1 0 0
chr17:82082632|82082974 hsa-miR-1972 0 1 0
chr17:82082632|82082974 hsa-miR-6822-3p 1 0 0
chr17:82082632|82082974 hsa-miR-6720-5p 0 1 0
chr17:82082632|82082974 hsa-miR-1233-3p 0 1 0
chr17:82082632|82082974 hsa-miR-6880-5p 1 1 0
chr17:82082632|82082974 hsa-miR-24-3p 0 1 0
chr17:82082632|82082974 hsa-miR-6741-5p 1 1 0
chr17:82082632|82082974 hsa-miR-6762-3p 1 1 0
chr17:82082632|82082974 hsa-miR-6727-5p 1 0 0
chr17:82082632|82082974 hsa-miR-6849-3p 0 1 0
chr17:82082632|82082974 hsa-miR-6742-5p 0 1 0
chr17:82082632|82082974 hsa-miR-6796-5p 0 1 0
chr17:82082632|82082974 hsa-miR-6798-5p 1 0 0
chr17:82082632|82082974 hsa-miR-4436b-5p 0 1 0
chr17:82082632|82082974 hsa-miR-6786-5p 1 1 0
chr17:82082632|82082974 hsa-miR-6852-5p 0 1 0
chr17:82082632|82082974 hsa-miR-939-3p 0 1 0
chr17:82082632|82082974 hsa-miR-6853-5p 1 1 0
chr17:82082632|82082974 hsa-miR-6763-3p 1 0 0
chr17:82082632|82082974 hsa-miR-4640-5p 0 1 0
chr17:82082632|82082974 hsa-miR-6771-5p 1 0 0
chr17:82082632|82082974 hsa-miR-4713-3p 0 1 0
chr17:82082632|82082974 hsa-miR-6824-5p 1 0 0
chr17:82082632|82082974 hsa-miR-6789-5p 1 0 0
chr17:82082632|82082974 hsa-miR-6800-5p 1 0 0
chr17:82082632|82082974 hsa-miR-7156-3p 0 1 0
chr17:82082632|82082974 hsa-miR-4776-5p 0 1 0
chr17:82082632|82082974 hsa-miR-6895-5p 0 1 0
chr17:82082632|82082974 hsa-miR-7106-3p 0 1 0
chr17:82082632|82082974 hsa-miR-6887-3p 0 1 0
chr17:82082632|82082974 hsa-miR-1910-5p 1 1 0
chr17:82082632|82082974 hsa-miR-6856-3p 0 1 0
chr17:82082632|82082974 hsa-miR-6886-3p 0 1 0
chr17:82082632|82082974 hsa-miR-5088-3p 0 1 0
chr17:82082632|82082974 hsa-miR-4283 0 1 0
chr17:82082632|82082974 hsa-miR-3675-5p 0 1 0
chr17:82082632|82082974 hsa-miR-10400-5p 1 0 0
chr17:82082632|82082974 hsa-miR-4763-3p 1 1 0
chr17:82082632|82082974 hsa-miR-6769b-5p 1 0 0
chr17:82082632|82082974 hsa-miR-6787-5p 1 0 0
chr17:82082632|82082974 hsa-miR-6812-5p 1 0 0
chr17:82082632|82082974 hsa-miR-6752-5p 1 0 0
chr17:82082632|82082974 hsa-miR-6756-5p 1 0 0
chr17:82082632|82082974 hsa-miR-6769a-5p 1 0 0
chr17:82082632|82082974 hsa-miR-6819-5p 0 1 0
chr17:82082632|82082974 hsa-miR-6722-3p 1 1 0
chr17:82082632|82082974 hsa-miR-6779-5p 1 0 0
chr17:82082632|82082974 hsa-miR-6808-5p 1 0 0
chr17:82082632|82082974 hsa-miR-320a-5p 0 1 0
chr17:82082632|82082974 hsa-miR-3620-5p 0 1 0
chr17:82082632|82082974 hsa-miR-6836-5p 1 0 0
chr17:82082632|82082974 hsa-miR-10396b-5p 1 0 0
chr17:82082632|82082974 hsa-miR-1909-3p 1 0 0
chr17:82082632|82082974 hsa-miR-328-5p 1 1 0
chr17:82082632|82082974 hsa-miR-4726-5p 0 1 0
chr17:82082632|82082974 hsa-miR-4745-5p 1 0 0
chr17:82082632|82082974 hsa-miR-6846-5p 1 1 0
chr17:82082632|82082974 hsa-miR-6848-5p 1 1 0
chr17:82082632|82082974 hsa-miR-939-5p 1 0 0
chr17:82082632|82082974 hsa-miR-4758-5p 1 0 0
chr17:82082632|82082974 hsa-miR-10396a-3p 1 1 0
chr17:82082632|82082974 hsa-miR-10396b-3p 1 1 0
chr17:82082632|82082974 hsa-miR-4664-5p 0 1 0
chr17:82082632|82082974 hsa-miR-4472 0 1 0
chr17:82082632|82082974 hsa-miR-6753-3p 0 1 0
chr17:82082632|82082974 hsa-miR-7107-3p 0 1 0
chr17:82082632|82082974 hsa-miR-6805-3p 1 0 0
chr17:82082632|82082974 hsa-miR-6837-5p 0 1 0
chr17:82082632|82082974 hsa-miR-6751-3p 0 1 0
chr17:82082632|82082974 hsa-miR-135a-2-3p 0 1 0
chr17:82082632|82082974 hsa-miR-4690-3p 0 1 0
chr17:82082632|82082974 hsa-miR-99b-3p 1 1 0
chr17:82082632|82082974 hsa-miR-6806-3p 0 1 0
chr17:82082632|82082974 hsa-miR-6505-3p 0 1 0
chr17:82082632|82082974 hsa-miR-125b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:82082632|82082974
ORF Type ORF1
Protein Length 63
Nucleotide Length 192
Protein Sequence LYALAPPPADLLGLVACGTQDCGLDWARVRSLPYTPGWGSGEQPQSPIQQAPHKMEGDRPQAP
Nucleotide Sequence CTGTACGCCCTGGCGCCTCCACCGGCGGACCTGCTTGGCCTGGTAGCCTGCGGGACACAGGACTGTGGGCTGGACTGGGCCAGGGTACGGTCTCTTCCCTACACGCCGGGCTGGGGAAGTGGGGAGCAGCCGCAGAGCCCCATCCAGCAAGCCCCCCACAAGATGGAGGGGGACAGACCCCAGGCACCGTGA
CircID chr17:82082632|82082974
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MVGCREGLRGPGLCLAQAGPQAPLPTHLSGSRSEKSTRASAPHAVSA
Nucleotide Sequence ATGGTGGGCTGCAGAGAAGGGCTCAGGGGCCCGGGGCTGTGCCTGGCCCAGGCTGGTCCACAAGCACCCCTGCCGACTCACCTGTCCGGATCCCGGAGCGAGAAGTCAACACGAGCTTCTGCACCCCACGCTGTATCAGCC
CircID chr17:82082632|82082974
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MVHKHPCRLTCPDPGARSQHELLHPTLYQP
Nucleotide Sequence CTGGTCCACAAGCACCCCTGCCGACTCACCTGTCCGGATCCCGGAGCGAGAAGTCAACACGAGCTTCTGCACCCCACGCTGTATCAGCCA
CircID chr17:82082632|82082974
ORF Type ORF4
Protein Length 98
Nucleotide Length 294
Protein Sequence MRDTGLWAGLGQGTVSSLHAGLGKWGAAAEPHPASPPQDGGGQTPGTVTAHNGGLQRRAQGPGAVPGPGWSTSTPADSPVRIPEREVNTSFCTPRCIS
Nucleotide Sequence CTGCGGGACACAGGACTGTGGGCTGGACTGGGCCAGGGTACGGTCTCTTCCCTACACGCCGGGCTGGGGAAGTGGGGAGCAGCCGCAGAGCCCCATCCAGCAAGCCCCCCACAAGATGGAGGGGGACAGACCCCAGGCACCGTGACAGCCCACAATGGTGGGCTGCAGAGAAGGGCTCAGGGGCCCGGGGCTGTGCCTGGCCCAGGCTGGTCCACAAGCACCCCTGCCGACTCACCTGTCCGGATCCCGGAGCGAGAAGTCAACACGAGCTTCTGCACCCCACGCTGTATCAGC
CircID chr17:82082632|82082974
ORF Type ORF5
Protein Length 38
Nucleotide Length 117
Protein Sequence MIQRGVQKLVLTSRSGIRTGESAGVLVDQPGPGTAPGP
Nucleotide Sequence CTGATACAGCGTGGGGTGCAGAAGCTCGTGTTGACTTCTCGCTCCGGGATCCGGACAGGTGAGTCGGCAGGGGTGCTTGTGGACCAGCCTGGGCCAGGCACAGCCCCGGGCCCCTGA
CircID chr17:82082632|82082974
ORF Type ORF6
Protein Length 67
Nucleotide Length 201
Protein Sequence MWAVTVPGVCPPPSCGGLAGWGSAAAPHFPSPACREETVPWPSPAHSPVSRRLPGQAGPPVEAPGRT
Nucleotide Sequence TTGTGGGCTGTCACGGTGCCTGGGGTCTGTCCCCCTCCATCTTGTGGGGGGCTTGCTGGATGGGGCTCTGCGGCTGCTCCCCACTTCCCCAGCCCGGCGTGTAGGGAAGAGACCGTACCCTGGCCCAGTCCAGCCCACAGTCCTGTGTCCCGCAGGCTACCAGGCCAAGCAGGTCCGCCGGTGGAGGCGCCAGGGCGTACA
CircID chr17:82082632|82082974
ORF Type ORF7
Protein Length 88
Nucleotide Length 264
Protein Sequence MWTSLGQAQPRAPEPFSAAHHCGLSRCLGSVPLHLVGGLLDGALRLLPTSPARRVGKRPYPGPVQPTVLCPAGYQAKQVRRWRRQGVQ
Nucleotide Sequence TTGTGGACCAGCCTGGGCCAGGCACAGCCCCGGGCCCCTGAGCCCTTCTCTGCAGCCCACCATTGTGGGCTGTCACGGTGCCTGGGGTCTGTCCCCCTCCATCTTGTGGGGGGCTTGCTGGATGGGGCTCTGCGGCTGCTCCCCACTTCCCCAGCCCGGCGTGTAGGGAAGAGACCGTACCCTGGCCCAGTCCAGCCCACAGTCCTGTGTCCCGCAGGCTACCAGGCCAAGCAGGTCCGCCGGTGGAGGCGCCAGGGCGTACAG
CircID chr17:82082632|82082974
ORF Type ORF8
Protein Length 42
Nucleotide Length 129
Protein Sequence MSPSLQPTIVGCHGAWGLSPSILWGACWMGLCGCSPLPQPGV
Nucleotide Sequence CTGAGCCCTTCTCTGCAGCCCACCATTGTGGGCTGTCACGGTGCCTGGGGTCTGTCCCCCTCCATCTTGTGGGGGGCTTGCTGGATGGGGCTCTGCGGCTGCTCCCCACTTCCCCAGCCCGGCGTGTAG
CircID chr17:82082632|82082974
ORF Type ORF9
Protein Length 27
Nucleotide Length 81
Protein Sequence MAQSSPQSCVPQATRPSRSAGGGARAY
Nucleotide Sequence CTGGCCCAGTCCAGCCCACAGTCCTGTGTCCCGCAGGCTACCAGGCCAAGCAGGTCCGCCGGTGGAGGCGCCAGGGCGTAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab