CircRNA Information

General Information
circRNA Basic Information
CircID chr17:82436738|82436988
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TCCAGAGTGTACGTGGCCCCTGGTTCACCTGCTCACTAGGAAAACACTGGTGGAACAGGGAGGGAGGTGAGGCACCGGTGCACGGTGGCCGTCCCGAGGCACCATGGGCTGGGGTCTGCTGGGGCTGTGCCCTGGCCTCTACCCGTGCAGGCTCCAGGCTGGGCAGTTCCGGCTGCAGGGTCACAGGGCCAGGGATGGCCTTCCCAGGCACATGGCCAGGACAACACACCCCCCACAACTTGGCACTGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:82436738|82436988 hsa-miR-148a-5p 0 0 1
chr17:82436738|82436988 hsa-miR-148a-3p 0 0 1
chr17:82436738|82436988 hsa-miR-152-5p 0 0 1
chr17:82436738|82436988 hsa-miR-152-3p 0 0 1
chr17:82436738|82436988 hsa-miR-382-5p 0 0 1
chr17:82436738|82436988 hsa-miR-382-3p 0 0 1
chr17:82436738|82436988 hsa-miR-328-5p 0 0 1
chr17:82436738|82436988 hsa-miR-328-3p 0 0 1
chr17:82436738|82436988 hsa-miR-148b-5p 0 0 1
chr17:82436738|82436988 hsa-miR-148b-3p 0 0 1
chr17:82436738|82436988 hsa-miR-384 0 0 1
chr17:82436738|82436988 hsa-miR-504-5p 0 0 1
chr17:82436738|82436988 hsa-miR-504-3p 0 0 1
chr17:82436738|82436988 hsa-miR-596 0 1 1
chr17:82436738|82436988 hsa-miR-661 1 1 1
chr17:82436738|82436988 hsa-miR-921 0 1 1
chr17:82436738|82436988 hsa-miR-922 0 0 1
chr17:82436738|82436988 hsa-miR-1291 0 0 1
chr17:82436738|82436988 hsa-miR-125a-3p 0 0 1
chr17:82436738|82436988 hsa-miR-491-5p 0 0 1
chr17:82436738|82436988 hsa-miR-146b-3p 0 1 1
chr17:82436738|82436988 hsa-miR-199a-5p 0 0 1
chr17:82436738|82436988 hsa-miR-339-5p 1 0 1
chr17:82436738|82436988 hsa-miR-1184 0 1 1
chr17:82436738|82436988 hsa-miR-455-5p 0 1 1
chr17:82436738|82436988 hsa-miR-199b-5p 0 0 1
chr17:82436738|82436988 hsa-miR-1274a 0 0 1
chr17:82436738|82436988 hsa-miR-550 0 0 1
chr17:82436738|82436988 hsa-miR-1274b 0 0 1
chr17:82436738|82436988 hsa-miR-1254 0 0 1
chr17:82436738|82436988 hsa-miR-564 0 1 0
chr17:82436738|82436988 hsa-miR-608 1 0 0
chr17:82436738|82436988 hsa-miR-1202 1 0 0
chr17:82436738|82436988 hsa-miR-1973 0 1 0
chr17:82436738|82436988 hsa-miR-3132 0 1 0
chr17:82436738|82436988 hsa-miR-4323 0 1 0
chr17:82436738|82436988 hsa-miR-4254 0 1 0
chr17:82436738|82436988 hsa-miR-4447 1 1 0
chr17:82436738|82436988 hsa-miR-4455 0 1 0
chr17:82436738|82436988 hsa-miR-3689c 1 0 0
chr17:82436738|82436988 hsa-miR-4493 0 1 0
chr17:82436738|82436988 hsa-miR-4525 1 0 0
chr17:82436738|82436988 hsa-miR-5100 1 0 0
chr17:82436738|82436988 hsa-miR-10226 0 1 0
chr17:82436738|82436988 hsa-miR-6720-5p 1 0 0
chr17:82436738|82436988 hsa-miR-766-3p 1 0 0
chr17:82436738|82436988 hsa-miR-6799-5p 1 0 0
chr17:82436738|82436988 hsa-miR-6515-5p 1 0 0
chr17:82436738|82436988 hsa-miR-6089 1 0 0
chr17:82436738|82436988 hsa-miR-6880-5p 1 0 0
chr17:82436738|82436988 hsa-miR-3187-3p 0 1 0
chr17:82436738|82436988 hsa-miR-197-5p 0 1 0
chr17:82436738|82436988 hsa-miR-3189-5p 1 0 0
chr17:82436738|82436988 hsa-miR-6849-3p 0 1 0
chr17:82436738|82436988 hsa-miR-1288-3p 0 1 0
chr17:82436738|82436988 hsa-miR-6796-5p 1 1 0
chr17:82436738|82436988 hsa-miR-4725-5p 1 1 0
chr17:82436738|82436988 hsa-miR-6732-5p 1 0 0
chr17:82436738|82436988 hsa-miR-5006-5p 1 0 0
chr17:82436738|82436988 hsa-miR-7109-5p 1 0 0
chr17:82436738|82436988 hsa-miR-204-3p 0 1 0
chr17:82436738|82436988 hsa-miR-1229-5p 1 1 0
chr17:82436738|82436988 hsa-miR-1908-3p 1 0 0
chr17:82436738|82436988 hsa-miR-4640-5p 1 1 0
chr17:82436738|82436988 hsa-miR-6753-5p 0 1 0
chr17:82436738|82436988 hsa-miR-7113-3p 0 1 0
chr17:82436738|82436988 hsa-miR-3191-5p 0 1 0
chr17:82436738|82436988 hsa-miR-92b-5p 0 1 0
chr17:82436738|82436988 hsa-miR-4787-5p 1 0 0
chr17:82436738|82436988 hsa-miR-550b-2-5p 0 1 0
chr17:82436738|82436988 hsa-miR-6866-5p 0 1 0
chr17:82436738|82436988 hsa-miR-4707-5p 1 0 0
chr17:82436738|82436988 hsa-miR-2355-3p 0 1 0
chr17:82436738|82436988 hsa-miR-1199-3p 1 1 0
chr17:82436738|82436988 hsa-miR-130b-5p 0 1 0
chr17:82436738|82436988 hsa-miR-1233-5p 1 0 0
chr17:82436738|82436988 hsa-miR-3689b-3p 1 0 0
chr17:82436738|82436988 hsa-miR-4763-3p 1 0 0
chr17:82436738|82436988 hsa-miR-6752-5p 1 1 0
chr17:82436738|82436988 hsa-miR-6803-5p 1 0 0
chr17:82436738|82436988 hsa-miR-6842-5p 1 1 0
chr17:82436738|82436988 hsa-miR-6851-5p 0 1 0
chr17:82436738|82436988 hsa-miR-7107-5p 1 0 0
chr17:82436738|82436988 hsa-miR-7110-5p 1 1 0
chr17:82436738|82436988 hsa-miR-6751-5p 1 0 0
chr17:82436738|82436988 hsa-miR-6763-5p 1 0 0
chr17:82436738|82436988 hsa-miR-6754-3p 0 1 0
chr17:82436738|82436988 hsa-miR-1909-3p 1 0 0
chr17:82436738|82436988 hsa-miR-3689a-3p 1 0 0
chr17:82436738|82436988 hsa-miR-4749-5p 1 0 0
chr17:82436738|82436988 hsa-miR-6848-5p 1 0 0
chr17:82436738|82436988 hsa-miR-1271-3p 0 1 0
chr17:82436738|82436988 hsa-miR-3116 0 1 0
chr17:82436738|82436988 hsa-miR-4747-5p 0 1 0
chr17:82436738|82436988 hsa-miR-4472 1 1 0
chr17:82436738|82436988 hsa-miR-550a-3-5p 0 1 0
chr17:82436738|82436988 hsa-miR-550a-5p 0 1 0
chr17:82436738|82436988 hsa-miR-6762-5p 0 1 0
chr17:82436738|82436988 hsa-miR-6837-5p 0 1 0
chr17:82436738|82436988 hsa-miR-6775-3p 0 1 0
chr17:82436738|82436988 hsa-miR-10392-3p 1 0 0
chr17:82436738|82436988 hsa-miR-3130-5p 1 0 0
chr17:82436738|82436988 hsa-miR-6769b-3p 1 1 0
chr17:82436738|82436988 hsa-miR-6891-3p 0 1 0
chr17:82436738|82436988 hsa-miR-33b-3p 0 1 0
chr17:82436738|82436988 hsa-miR-4690-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:82436738|82436988
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MGSAGAVPWPLPVQAPGWAVPAAGSQGQGWPSQAHGQDNTPPTTWH
Nucleotide Sequence CTGGGGTCTGCTGGGGCTGTGCCCTGGCCTCTACCCGTGCAGGCTCCAGGCTGGGCAGTTCCGGCTGCAGGGTCACAGGGCCAGGGATGGCCTTCCCAGGCACATGGCCAGGACAACACACCCCCCACAACTTGGCACTGA
CircID chr17:82436738|82436988
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MGWGLLGLCPGLYPCRLQAGQFRLQGHRARDGLPRHMARTTHPPQLGTD
Nucleotide Sequence ATGGGCTGGGGTCTGCTGGGGCTGTGCCCTGGCCTCTACCCGTGCAGGCTCCAGGCTGGGCAGTTCCGGCTGCAGGGTCACAGGGCCAGGGATGGCCTTCCCAGGCACATGGCCAGGACAACACACCCCCCACAACTTGGCACTGAC
CircID chr17:82436738|82436988
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MASTRAGSRLGSSGCRVTGPGMAFPGTWPGQHTPHNLALT
Nucleotide Sequence CTGGCCTCTACCCGTGCAGGCTCCAGGCTGGGCAGTTCCGGCTGCAGGGTCACAGGGCCAGGGATGGCCTTCCCAGGCACATGGCCAGGACAACACACCCCCCACAACTTGGCACTGACC
CircID chr17:82436738|82436988
ORF Type ORF4
Protein Length 62
Nucleotide Length 189
Protein Sequence MSWPCAWEGHPWPCDPAAGTAQPGACTGRGQGTAPADPSPWCLGTATVHRCLTSLPVPPVFS
Nucleotide Sequence TTGTCCTGGCCATGTGCCTGGGAAGGCCATCCCTGGCCCTGTGACCCTGCAGCCGGAACTGCCCAGCCTGGAGCCTGCACGGGTAGAGGCCAGGGCACAGCCCCAGCAGACCCCAGCCCATGGTGCCTCGGGACGGCCACCGTGCACCGGTGCCTCACCTCCCTCCCTGTTCCACCAGTGTTTTCCTAG
CircID chr17:82436738|82436988
ORF Type ORF5
Protein Length 79
Nucleotide Length 237
Protein Sequence MWGVCCPGHVPGKAIPGPVTLQPELPSLEPARVEARAQPQQTPAHGASGRPPCTGASPPSLFHQCFPSEQVNQGPRTLW
Nucleotide Sequence TTGTGGGGGGTGTGTTGTCCTGGCCATGTGCCTGGGAAGGCCATCCCTGGCCCTGTGACCCTGCAGCCGGAACTGCCCAGCCTGGAGCCTGCACGGGTAGAGGCCAGGGCACAGCCCCAGCAGACCCCAGCCCATGGTGCCTCGGGACGGCCACCGTGCACCGGTGCCTCACCTCCCTCCCTGTTCCACCAGTGTTTTCCTAGTGAGCAGGTGAACCAGGGGCCACGTACACTCTGG
CircID chr17:82436738|82436988
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MVPRDGHRAPVPHLPPCSTSVFLVSR
Nucleotide Sequence ATGGTGCCTCGGGACGGCCACCGTGCACCGGTGCCTCACCTCCCTCCCTGTTCCACCAGTGTTTTCCTAGTGAGCAGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab