CircRNA Information

General Information
circRNA Basic Information
CircID chr17:82439017|82439163
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCACAGCTGAAGAAACTGAGGCACGGGCAGGTGGAGGCACCCTACCCAGCAGTGGGAAGCCCAGGCCAGGCCAAGGCCCCCCAGCCCTCGCTTGGGACAGATGCTGCCCCTGACCTGCTGCCTGCCACGCCTGATCTCTCGCCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:82439017|82439163 hsa-miR-107 0 1 1
chr17:82439017|82439163 hsa-miR-214-5p 0 0 1
chr17:82439017|82439163 hsa-miR-214-3p 0 0 1
chr17:82439017|82439163 hsa-miR-637 0 1 1
chr17:82439017|82439163 hsa-miR-661 1 1 1
chr17:82439017|82439163 hsa-miR-486-3p 0 1 1
chr17:82439017|82439163 hsa-miR-1207-3p 0 0 1
chr17:82439017|82439163 hsa-miR-188-3p 0 0 1
chr17:82439017|82439163 hsa-miR-1207-5p 1 0 1
chr17:82439017|82439163 hsa-miR-1260 0 0 1
chr17:82439017|82439163 hsa-miR-103 0 0 1
chr17:82439017|82439163 hsa-miR-596 1 0 0
chr17:82439017|82439163 hsa-miR-650 1 0 0
chr17:82439017|82439163 hsa-miR-663a 1 0 0
chr17:82439017|82439163 hsa-miR-762 1 1 0
chr17:82439017|82439163 hsa-miR-1295a 1 0 0
chr17:82439017|82439163 hsa-miR-1268a 1 0 0
chr17:82439017|82439163 hsa-miR-1538 1 0 0
chr17:82439017|82439163 hsa-miR-2861 1 0 0
chr17:82439017|82439163 hsa-miR-3176 0 1 0
chr17:82439017|82439163 hsa-miR-3196 1 0 0
chr17:82439017|82439163 hsa-miR-3621 1 1 0
chr17:82439017|82439163 hsa-miR-3665 1 0 0
chr17:82439017|82439163 hsa-miR-3714 1 0 0
chr17:82439017|82439163 hsa-miR-3937 1 0 0
chr17:82439017|82439163 hsa-miR-1268b 1 0 0
chr17:82439017|82439163 hsa-miR-4507 1 0 0
chr17:82439017|82439163 hsa-miR-4514 0 1 0
chr17:82439017|82439163 hsa-miR-4530 1 0 0
chr17:82439017|82439163 hsa-miR-1587 1 0 0
chr17:82439017|82439163 hsa-miR-4656 1 0 0
chr17:82439017|82439163 hsa-miR-4688 1 1 0
chr17:82439017|82439163 hsa-miR-4706 1 0 0
chr17:82439017|82439163 hsa-miR-4736 1 0 0
chr17:82439017|82439163 hsa-miR-5787 0 1 0
chr17:82439017|82439163 hsa-miR-6085 1 0 0
chr17:82439017|82439163 hsa-miR-10226 1 0 0
chr17:82439017|82439163 hsa-miR-12116 1 0 0
chr17:82439017|82439163 hsa-miR-4731-5p 0 1 0
chr17:82439017|82439163 hsa-miR-6836-3p 0 1 0
chr17:82439017|82439163 hsa-miR-212-5p 0 1 0
chr17:82439017|82439163 hsa-miR-6861-5p 0 1 0
chr17:82439017|82439163 hsa-miR-3692-5p 0 1 0
chr17:82439017|82439163 hsa-miR-3934-5p 1 0 0
chr17:82439017|82439163 hsa-miR-4695-5p 1 0 0
chr17:82439017|82439163 hsa-miR-4722-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6820-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6727-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6806-5p 1 1 0
chr17:82439017|82439163 hsa-miR-8069 1 0 0
chr17:82439017|82439163 hsa-miR-7108-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6782-5p 1 0 0
chr17:82439017|82439163 hsa-miR-939-3p 0 1 0
chr17:82439017|82439163 hsa-miR-1226-5p 1 0 0
chr17:82439017|82439163 hsa-miR-1229-5p 0 1 0
chr17:82439017|82439163 hsa-miR-4640-5p 1 0 0
chr17:82439017|82439163 hsa-miR-885-3p 1 0 0
chr17:82439017|82439163 hsa-miR-7113-3p 1 0 0
chr17:82439017|82439163 hsa-miR-1228-5p 1 0 0
chr17:82439017|82439163 hsa-miR-4690-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6749-5p 1 0 0
chr17:82439017|82439163 hsa-miR-4787-5p 1 0 0
chr17:82439017|82439163 hsa-miR-103a-3p 0 1 0
chr17:82439017|82439163 hsa-miR-4446-3p 0 1 0
chr17:82439017|82439163 hsa-miR-6789-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6886-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6781-5p 1 0 0
chr17:82439017|82439163 hsa-miR-7112-5p 1 0 0
chr17:82439017|82439163 hsa-miR-4707-5p 1 0 0
chr17:82439017|82439163 hsa-miR-3158-3p 0 1 0
chr17:82439017|82439163 hsa-miR-3944-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6801-5p 1 0 0
chr17:82439017|82439163 hsa-miR-1233-5p 1 0 0
chr17:82439017|82439163 hsa-miR-4763-3p 1 0 0
chr17:82439017|82439163 hsa-miR-6778-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6816-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6893-5p 1 0 0
chr17:82439017|82439163 hsa-miR-5001-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6743-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6803-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6754-3p 1 1 0
chr17:82439017|82439163 hsa-miR-3620-5p 1 1 0
chr17:82439017|82439163 hsa-miR-328-5p 1 0 0
chr17:82439017|82439163 hsa-miR-449c-5p 1 0 0
chr17:82439017|82439163 hsa-miR-4632-5p 1 0 0
chr17:82439017|82439163 hsa-miR-4649-5p 1 1 0
chr17:82439017|82439163 hsa-miR-6729-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6846-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6848-5p 1 1 0
chr17:82439017|82439163 hsa-miR-6885-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6511a-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6511b-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6753-3p 1 0 0
chr17:82439017|82439163 hsa-miR-6762-5p 1 0 0
chr17:82439017|82439163 hsa-miR-6529-5p 1 1 0
chr17:82439017|82439163 hsa-miR-6829-3p 1 0 0
chr17:82439017|82439163 hsa-miR-9851-3p 1 0 0
chr17:82439017|82439163 hsa-miR-6783-3p 1 1 0
chr17:82439017|82439163 hsa-miR-3619-5p 1 1 0
chr17:82439017|82439163 hsa-miR-3622b-3p 1 0 0
chr17:82439017|82439163 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:82439017|82439163
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MKKLRHGQVEAPYPAVGSPGQAKAPQPSLGTDAAPDLLPATPDLSP
Nucleotide Sequence CTGAAGAAACTGAGGCACGGGCAGGTGGAGGCACCCTACCCAGCAGTGGGAAGCCCAGGCCAGGCCAAGGCCCCCCAGCCCTCGCTTGGGACAGATGCTGCCCCTGACCTGCTGCCTGCCACGCCTGATCTCTCGCCC
CircID chr17:82439017|82439163
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MSQARAGGPWPGLGFPLLGRVPPPARASVSSAV
Nucleotide Sequence CTGTCCCAAGCGAGGGCTGGGGGGCCTTGGCCTGGCCTGGGCTTCCCACTGCTGGGTAGGGTGCCTCCACCTGCCCGTGCCTCAGTTTCTTCAGCTGTG
CircID chr17:82439017|82439163
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MGGLGLAWASHCWVGCLHLPVPQFLQL
Nucleotide Sequence CTGGGGGGCCTTGGCCTGGCCTGGGCTTCCCACTGCTGGGTAGGGTGCCTCCACCTGCCCGTGCCTCAGTTTCTTCAGCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab