CircRNA Information

General Information
circRNA Basic Information
CircID chr17:8289662|8289824
Strand +
CircType exon
Host Gene ENSG00000108961.12;
Algorism CIRI2;
Sequence CTGTTGTCAGGGCTTGGGGTGGGGGAACAGATGGAGACAGAACATCATCCAGGCCTGAGGTTTGGAAATTGCCAATTCCTGTTCCCCAGAGGACCTGGGTATCAGTTACCCCAAACCTCTGGCCCACTCCTGCTTCCTTGGAGGATCCCACCAGTGAGTCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:8289662|8289824 hsa-miR-182-5p 0 0 1
chr17:8289662|8289824 hsa-miR-182-3p 0 0 1
chr17:8289662|8289824 hsa-miR-136-5p 0 0 1
chr17:8289662|8289824 hsa-miR-136-3p 0 0 1
chr17:8289662|8289824 hsa-miR-326 0 0 1
chr17:8289662|8289824 hsa-miR-637 0 0 1
chr17:8289662|8289824 hsa-miR-638 1 0 1
chr17:8289662|8289824 hsa-miR-541-5p 0 0 1
chr17:8289662|8289824 hsa-miR-541-3p 0 0 1
chr17:8289662|8289824 hsa-miR-1255a 0 0 1
chr17:8289662|8289824 hsa-miR-654-5p 0 0 1
chr17:8289662|8289824 hsa-miR-361-3p 0 0 1
chr17:8289662|8289824 hsa-miR-769-3p 1 1 1
chr17:8289662|8289824 hsa-miR-330-5p 0 0 1
chr17:8289662|8289824 hsa-miR-450b-3p 0 0 1
chr17:8289662|8289824 hsa-miR-1255b 0 0 1
chr17:8289662|8289824 hsa-miR-1254 0 0 1
chr17:8289662|8289824 hsa-miR-549 0 0 1
chr17:8289662|8289824 hsa-miR-4257 0 1 0
chr17:8289662|8289824 hsa-miR-3909 0 1 0
chr17:8289662|8289824 hsa-miR-4439 0 1 0
chr17:8289662|8289824 hsa-miR-4456 0 1 0
chr17:8289662|8289824 hsa-miR-4481 0 1 0
chr17:8289662|8289824 hsa-miR-4651 1 0 0
chr17:8289662|8289824 hsa-miR-4654 1 1 0
chr17:8289662|8289824 hsa-miR-4739 1 0 0
chr17:8289662|8289824 hsa-miR-4748 0 1 0
chr17:8289662|8289824 hsa-miR-6127 1 0 0
chr17:8289662|8289824 hsa-miR-6165 0 1 0
chr17:8289662|8289824 hsa-miR-8089 1 1 0
chr17:8289662|8289824 hsa-miR-12127 0 1 0
chr17:8289662|8289824 hsa-miR-4433b-3p 0 1 0
chr17:8289662|8289824 hsa-miR-4726-3p 0 1 0
chr17:8289662|8289824 hsa-miR-4433a-3p 0 1 0
chr17:8289662|8289824 hsa-miR-671-5p 1 0 0
chr17:8289662|8289824 hsa-miR-6728-5p 1 0 0
chr17:8289662|8289824 hsa-miR-6089 1 0 0
chr17:8289662|8289824 hsa-miR-4695-5p 1 0 0
chr17:8289662|8289824 hsa-miR-4722-5p 1 1 0
chr17:8289662|8289824 hsa-miR-6793-5p 1 0 0
chr17:8289662|8289824 hsa-miR-6881-5p 0 1 0
chr17:8289662|8289824 hsa-miR-6782-5p 1 1 0
chr17:8289662|8289824 hsa-miR-4713-5p 0 1 0
chr17:8289662|8289824 hsa-miR-532-3p 0 1 0
chr17:8289662|8289824 hsa-miR-4713-3p 1 1 0
chr17:8289662|8289824 hsa-miR-4743-3p 0 1 0
chr17:8289662|8289824 hsa-miR-6830-5p 0 1 0
chr17:8289662|8289824 hsa-miR-6828-5p 0 1 0
chr17:8289662|8289824 hsa-miR-6781-5p 1 1 0
chr17:8289662|8289824 hsa-miR-629-3p 0 1 0
chr17:8289662|8289824 hsa-miR-653-3p 0 1 0
chr17:8289662|8289824 hsa-miR-4649-3p 1 0 0
chr17:8289662|8289824 hsa-miR-6888-3p 0 1 0
chr17:8289662|8289824 hsa-miR-3680-5p 0 1 0
chr17:8289662|8289824 hsa-miR-4652-3p 0 1 0
chr17:8289662|8289824 hsa-miR-6769b-5p 1 0 0
chr17:8289662|8289824 hsa-miR-6778-5p 1 0 0
chr17:8289662|8289824 hsa-miR-6756-5p 1 1 0
chr17:8289662|8289824 hsa-miR-1249-5p 1 0 0
chr17:8289662|8289824 hsa-miR-6722-3p 1 0 0
chr17:8289662|8289824 hsa-miR-4726-5p 1 1 0
chr17:8289662|8289824 hsa-miR-4700-5p 0 1 0
chr17:8289662|8289824 hsa-miR-4667-5p 0 1 0
chr17:8289662|8289824 hsa-miR-6784-3p 0 1 0
chr17:8289662|8289824 hsa-miR-10400-3p 1 0 0
chr17:8289662|8289824 hsa-miR-6819-3p 1 0 0
chr17:8289662|8289824 hsa-miR-4691-5p 0 1 0
chr17:8289662|8289824 hsa-miR-6827-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:8289662|8289824
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence LLSGLGVGEQMETEHHPGLRFGNCQFLFPRGPGYQLPQTSGPLLLPWRIPPVSL
Nucleotide Sequence CTGTTGTCAGGGCTTGGGGTGGGGGAACAGATGGAGACAGAACATCATCCAGGCCTGAGGTTTGGAAATTGCCAATTCCTGTTCCCCAGAGGACCTGGGTATCAGTTACCCCAAACCTCTGGCCCACTCCTGCTTCCTTGGAGGATCCCACCAGTGAGTCTC
CircID chr17:8289662|8289824
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MEIANSCSPEDLGISYPKPLAHSCFLGGSHQ
Nucleotide Sequence TTGGAAATTGCCAATTCCTGTTCCCCAGAGGACCTGGGTATCAGTTACCCCAAACCTCTGGCCCACTCCTGCTTCCTTGGAGGATCCCACCAGTGA
CircID chr17:8289662|8289824
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MPIPVPQRTWVSVTPNLWPTPASLEDPTSES
Nucleotide Sequence TTGCCAATTCCTGTTCCCCAGAGGACCTGGGTATCAGTTACCCCAAACCTCTGGCCCACTCCTGCTTCCTTGGAGGATCCCACCAGTGAGTCT
CircID chr17:8289662|8289824
ORF Type ORF4
Protein Length 51
Nucleotide Length 153
Protein Sequence MVGSSKEAGVGQRFGVTDTQVLWGTGIGNFQTSGLDDVLSPSVPPPQALTT
Nucleotide Sequence CTGGTGGGATCCTCCAAGGAAGCAGGAGTGGGCCAGAGGTTTGGGGTAACTGATACCCAGGTCCTCTGGGGAACAGGAATTGGCAATTTCCAAACCTCAGGCCTGGATGATGTTCTGTCTCCATCTGTTCCCCCACCCCAAGCCCTGACAACA
CircID chr17:8289662|8289824
ORF Type ORF5
Protein Length 32
Nucleotide Length 99
Protein Sequence MIPRSSGEQELAISKPQAWMMFCLHLFPHPKP
Nucleotide Sequence CTGATACCCAGGTCCTCTGGGGAACAGGAATTGGCAATTTCCAAACCTCAGGCCTGGATGATGTTCTGTCTCCATCTGTTCCCCCACCCCAAGCCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab