CircRNA Information

General Information
circRNA Basic Information
CircID chr17:83094537|83094647
Strand +
CircType exon
Host Gene ENSG00000176845.11;
Algorism CIRI2;
Sequence GGCCCCACCAGGACCGCAGCGCCCACCGCAGCCTGTGACTCATCAGGAGAGGAAGGGCAGCGGCCCACGGAGTCAGTCCGTGCCAACCTCACAAGGGTTCAGCCCCCTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:83094537|83094647 hsa-miR-96-5p 0 0 1
chr17:83094537|83094647 hsa-miR-96-3p 0 0 1
chr17:83094537|83094647 hsa-miR-345-5p 0 0 1
chr17:83094537|83094647 hsa-miR-345-3p 0 0 1
chr17:83094537|83094647 hsa-miR-564 0 0 1
chr17:83094537|83094647 hsa-miR-604 0 0 1
chr17:83094537|83094647 hsa-miR-1271-5p 0 0 1
chr17:83094537|83094647 hsa-miR-1271-3p 0 0 1
chr17:83094537|83094647 hsa-miR-541-5p 0 0 1
chr17:83094537|83094647 hsa-miR-541-3p 0 0 1
chr17:83094537|83094647 hsa-miR-938 0 0 1
chr17:83094537|83094647 hsa-miR-1294 1 1 1
chr17:83094537|83094647 hsa-miR-654-5p 0 0 1
chr17:83094537|83094647 hsa-miR-513a-5p 0 0 1
chr17:83094537|83094647 hsa-miR-220c 0 0 1
chr17:83094537|83094647 hsa-miR-602 1 0 0
chr17:83094537|83094647 hsa-miR-658 1 0 0
chr17:83094537|83094647 hsa-miR-762 1 0 0
chr17:83094537|83094647 hsa-miR-1268a 1 0 0
chr17:83094537|83094647 hsa-miR-3197 1 0 0
chr17:83094537|83094647 hsa-miR-1268b 1 0 0
chr17:83094537|83094647 hsa-miR-4449 1 0 0
chr17:83094537|83094647 hsa-miR-4502 0 1 0
chr17:83094537|83094647 hsa-miR-4513 0 1 0
chr17:83094537|83094647 hsa-miR-4651 1 0 0
chr17:83094537|83094647 hsa-miR-4656 1 0 0
chr17:83094537|83094647 hsa-miR-4734 1 0 0
chr17:83094537|83094647 hsa-miR-4741 1 0 0
chr17:83094537|83094647 hsa-miR-4767 1 0 0
chr17:83094537|83094647 hsa-miR-6086 0 1 0
chr17:83094537|83094647 hsa-miR-9899 1 0 0
chr17:83094537|83094647 hsa-miR-9986 0 1 0
chr17:83094537|83094647 hsa-miR-12113 0 1 0
chr17:83094537|83094647 hsa-miR-18a-3p 0 1 0
chr17:83094537|83094647 hsa-miR-1236-5p 1 0 0
chr17:83094537|83094647 hsa-miR-6741-5p 1 0 0
chr17:83094537|83094647 hsa-miR-6762-3p 0 1 0
chr17:83094537|83094647 hsa-miR-3180-3p 1 0 0
chr17:83094537|83094647 hsa-miR-6793-5p 1 0 0
chr17:83094537|83094647 hsa-miR-6796-5p 1 1 0
chr17:83094537|83094647 hsa-miR-6732-5p 1 0 0
chr17:83094537|83094647 hsa-miR-6805-5p 0 1 0
chr17:83094537|83094647 hsa-miR-6882-3p 1 1 0
chr17:83094537|83094647 hsa-miR-6786-5p 1 0 0
chr17:83094537|83094647 hsa-miR-3667-3p 0 1 0
chr17:83094537|83094647 hsa-miR-937-5p 1 1 0
chr17:83094537|83094647 hsa-miR-4740-5p 0 1 0
chr17:83094537|83094647 hsa-miR-4746-3p 1 0 0
chr17:83094537|83094647 hsa-miR-3605-3p 0 1 0
chr17:83094537|83094647 hsa-miR-6886-3p 0 1 0
chr17:83094537|83094647 hsa-miR-6726-5p 1 0 0
chr17:83094537|83094647 hsa-miR-6737-5p 1 0 0
chr17:83094537|83094647 hsa-miR-10526-3p 1 0 0
chr17:83094537|83094647 hsa-miR-328-5p 1 0 0
chr17:83094537|83094647 hsa-miR-6846-5p 1 1 0
chr17:83094537|83094647 hsa-miR-6848-5p 1 0 0
chr17:83094537|83094647 hsa-miR-939-5p 1 0 0
chr17:83094537|83094647 hsa-miR-10394-3p 1 0 0
chr17:83094537|83094647 hsa-miR-3940-5p 1 0 0
chr17:83094537|83094647 hsa-miR-1199-5p 1 0 0
chr17:83094537|83094647 hsa-miR-7151-3p 0 1 0
chr17:83094537|83094647 hsa-miR-3059-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:83094537|83094647
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MARTDSVGRCPSSPDESQAAVGAAVLVG
Nucleotide Sequence TTGGCACGGACTGACTCCGTGGGCCGCTGCCCTTCCTCTCCTGATGAGTCACAGGCTGCGGTGGGCGCTGCGGTCCTGGTGGGG
CircID chr17:83094537|83094647
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MTPWAAALPLLMSHRLRWALRSWWG
Nucleotide Sequence CTGACTCCGTGGGCCGCTGCCCTTCCTCTCCTGATGAGTCACAGGCTGCGGTGGGCGCTGCGGTCCTGGTGGGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab