CircRNA Information

General Information
circRNA Basic Information
CircID chr18:11851593|11851793
Strand +
CircType exon
Host Gene ENSG00000255112.2;
Algorism CIRI2;
Sequence ACCAGCCATCGACTTGGTCACCTTGCCCATCGTCACCGCCGTCTGGACCCTGGCAGCCACTGCATCGACTCGCGCACTCATTCTCAAGAAATTCACCGCCTGGTTCTTCTGGCGGATGGCATTTTCGGCGTGTATCCTCGCAACTTCCATGTTGCCCTTCTGAATGGCCTTTTTAATTTTGGCCTTTTCGGCCTTTTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr18:11851593|11851793 hsa-miR-198 0 0 1
chr18:11851593|11851793 hsa-miR-526b-5p 0 0 1
chr18:11851593|11851793 hsa-miR-526b-3p 0 0 1
chr18:11851593|11851793 hsa-miR-578 0 0 1
chr18:11851593|11851793 hsa-miR-580-5p 0 0 1
chr18:11851593|11851793 hsa-miR-580-3p 0 0 1
chr18:11851593|11851793 hsa-miR-604 0 0 1
chr18:11851593|11851793 hsa-miR-647 0 0 1
chr18:11851593|11851793 hsa-miR-548b-3p 0 0 1
chr18:11851593|11851793 hsa-miR-1300 0 0 1
chr18:11851593|11851793 hsa-miR-1185 0 0 1
chr18:11851593|11851793 hsa-miR-762 1 0 0
chr18:11851593|11851793 hsa-miR-3937 1 0 0
chr18:11851593|11851793 hsa-miR-1268b 1 0 0
chr18:11851593|11851793 hsa-miR-4467 1 0 0
chr18:11851593|11851793 hsa-miR-4486 1 0 0
chr18:11851593|11851793 hsa-miR-1587 1 0 0
chr18:11851593|11851793 hsa-miR-3960 1 0 0
chr18:11851593|11851793 hsa-miR-6068 1 0 0
chr18:11851593|11851793 hsa-miR-8072 1 0 0
chr18:11851593|11851793 hsa-miR-210-3p 1 0 0
chr18:11851593|11851793 hsa-miR-6894-5p 1 0 0
chr18:11851593|11851793 hsa-miR-25-5p 1 0 0
chr18:11851593|11851793 hsa-miR-6799-5p 1 0 0
chr18:11851593|11851793 hsa-miR-6089 1 0 0
chr18:11851593|11851793 hsa-miR-3605-5p 1 0 0
chr18:11851593|11851793 hsa-miR-6786-5p 1 0 0
chr18:11851593|11851793 hsa-miR-1909-5p 1 0 0
chr18:11851593|11851793 hsa-miR-4640-5p 1 0 0
chr18:11851593|11851793 hsa-miR-1908-5p 1 0 0
chr18:11851593|11851793 hsa-miR-7854-3p 1 0 0
chr18:11851593|11851793 hsa-miR-4743-5p 1 0 0
chr18:11851593|11851793 hsa-miR-4787-5p 1 0 0
chr18:11851593|11851793 hsa-miR-574-5p 1 0 0
chr18:11851593|11851793 hsa-miR-598-5p 1 0 0
chr18:11851593|11851793 hsa-miR-2277-5p 1 0 0
chr18:11851593|11851793 hsa-miR-10400-5p 1 0 0
chr18:11851593|11851793 hsa-miR-1207-5p 1 0 0
chr18:11851593|11851793 hsa-miR-4763-3p 1 0 0
chr18:11851593|11851793 hsa-miR-6787-5p 1 0 0
chr18:11851593|11851793 hsa-miR-6803-5p 1 0 0
chr18:11851593|11851793 hsa-miR-6751-5p 1 0 0
chr18:11851593|11851793 hsa-miR-6879-5p 1 0 0
chr18:11851593|11851793 hsa-miR-3620-5p 1 0 0
chr18:11851593|11851793 hsa-miR-5196-5p 1 0 0
chr18:11851593|11851793 hsa-miR-328-5p 1 0 0
chr18:11851593|11851793 hsa-miR-4632-5p 1 0 0
chr18:11851593|11851793 hsa-miR-4685-5p 1 0 0
chr18:11851593|11851793 hsa-miR-4725-3p 1 0 0
chr18:11851593|11851793 hsa-miR-6729-5p 1 0 0
chr18:11851593|11851793 hsa-miR-6858-5p 1 0 0
chr18:11851593|11851793 hsa-miR-4758-5p 1 0 0
chr18:11851593|11851793 hsa-miR-6790-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr18:11851593|11851793
ORF Type ORF1
Protein Length 53
Nucleotide Length 159
Protein Sequence MDPGSHCIDSRTHSQEIHRLVLLADGIFGVYPRNFHVALLNGLFNFGLFGLFL
Nucleotide Sequence CTGGACCCTGGCAGCCACTGCATCGACTCGCGCACTCATTCTCAAGAAATTCACCGCCTGGTTCTTCTGGCGGATGGCATTTTCGGCGTGTATCCTCGCAACTTCCATGTTGCCCTTCTGAATGGCCTTTTTAATTTTGGCCTTTTCGGCCTTTTCCTC
CircID chr18:11851593|11851793
ORF Type ORF2
Protein Length 49
Nucleotide Length 150
Protein Sequence MVTLPIVTAVWTLAATASTRALILKKFTAWFFWRMAFSACILATSMLPF
Nucleotide Sequence TTGGTCACCTTGCCCATCGTCACCGCCGTCTGGACCCTGGCAGCCACTGCATCGACTCGCGCACTCATTCTCAAGAAATTCACCGCCTGGTTCTTCTGGCGGATGGCATTTTCGGCGTGTATCCTCGCAACTTCCATGTTGCCCTTCTGA
CircID chr18:11851593|11851793
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MHRLAHSFSRNSPPGSSGGWHFRRVSSQLPCCPSEWPF
Nucleotide Sequence CTGCATCGACTCGCGCACTCATTCTCAAGAAATTCACCGCCTGGTTCTTCTGGCGGATGGCATTTTCGGCGTGTATCCTCGCAACTTCCATGTTGCCCTTCTGAATGGCCTTTTTAA
CircID chr18:11851593|11851793
ORF Type ORF4
Protein Length 50
Nucleotide Length 150
Protein Sequence MEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAG
Nucleotide Sequence ATGGAAGTTGCGAGGATACACGCCGAAAATGCCATCCGCCAGAAGAACCAGGCGGTGAATTTCTTGAGAATGAGTGCGCGAGTCGATGCAGTGGCTGCCAGGGTCCAGACGGCGGTGACGATGGGCAAGGTGACCAAGTCGATGGCTGGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab