CircRNA Information

General Information
circRNA Basic Information
CircID chr18:12329531|12329635
Strand -
CircType exon
Host Gene ENSG00000176014.11;
Algorism CIRI2;
Sequence AGTGGACAGACTGAGATGGCCTCCCTCTGGGCCTCTAGTTGGCAACTTTCTCACCCGGGGGCTCCTCTTTCTCCTTTTCCCGCTCCTTGTTCCAGTCCTTAAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr18:12329531|12329635 hsa-miR-539-5p 0 0 1
chr18:12329531|12329635 hsa-miR-539-3p 0 0 1
chr18:12329531|12329635 hsa-miR-583 0 1 1
chr18:12329531|12329635 hsa-miR-622 0 0 1
chr18:12329531|12329635 hsa-miR-1321 0 0 1
chr18:12329531|12329635 hsa-miR-1225-3p 1 0 1
chr18:12329531|12329635 hsa-miR-762 1 0 0
chr18:12329531|12329635 hsa-miR-1202 1 0 0
chr18:12329531|12329635 hsa-miR-2861 1 0 0
chr18:12329531|12329635 hsa-miR-3131 1 0 0
chr18:12329531|12329635 hsa-miR-3141 1 0 0
chr18:12329531|12329635 hsa-miR-3196 1 0 0
chr18:12329531|12329635 hsa-miR-4298 1 0 0
chr18:12329531|12329635 hsa-miR-4270 1 0 0
chr18:12329531|12329635 hsa-miR-4281 1 0 0
chr18:12329531|12329635 hsa-miR-4428 1 0 0
chr18:12329531|12329635 hsa-miR-4430 1 0 0
chr18:12329531|12329635 hsa-miR-4466 1 0 0
chr18:12329531|12329635 hsa-miR-4498 1 0 0
chr18:12329531|12329635 hsa-miR-2392 1 0 0
chr18:12329531|12329635 hsa-miR-4515 1 0 0
chr18:12329531|12329635 hsa-miR-1587 1 0 0
chr18:12329531|12329635 hsa-miR-4688 1 0 0
chr18:12329531|12329635 hsa-miR-4706 1 0 0
chr18:12329531|12329635 hsa-miR-6085 1 0 0
chr18:12329531|12329635 hsa-miR-6090 1 0 0
chr18:12329531|12329635 hsa-miR-6124 1 1 0
chr18:12329531|12329635 hsa-miR-8052 1 0 0
chr18:12329531|12329635 hsa-miR-12115 1 0 0
chr18:12329531|12329635 hsa-miR-12118 1 0 0
chr18:12329531|12329635 hsa-miR-12120 1 0 0
chr18:12329531|12329635 hsa-miR-4433b-3p 1 0 0
chr18:12329531|12329635 hsa-miR-15a-3p 0 1 0
chr18:12329531|12329635 hsa-miR-4433a-3p 1 0 0
chr18:12329531|12329635 hsa-miR-6894-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6089 1 0 0
chr18:12329531|12329635 hsa-miR-6746-5p 1 1 0
chr18:12329531|12329635 hsa-miR-6840-5p 0 1 0
chr18:12329531|12329635 hsa-miR-7845-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6716-5p 1 0 0
chr18:12329531|12329635 hsa-miR-3180-3p 1 0 0
chr18:12329531|12329635 hsa-miR-1224-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6760-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6881-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6782-5p 1 0 0
chr18:12329531|12329635 hsa-miR-5008-5p 0 1 0
chr18:12329531|12329635 hsa-miR-185-5p 1 1 0
chr18:12329531|12329635 hsa-miR-3127-5p 1 0 0
chr18:12329531|12329635 hsa-miR-1228-5p 1 0 0
chr18:12329531|12329635 hsa-miR-92b-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6834-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6789-5p 1 0 0
chr18:12329531|12329635 hsa-miR-3162-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6781-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6892-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6866-5p 0 1 0
chr18:12329531|12329635 hsa-miR-7846-3p 1 0 0
chr18:12329531|12329635 hsa-miR-525-5p 0 1 0
chr18:12329531|12329635 hsa-miR-4529-5p 0 1 0
chr18:12329531|12329635 hsa-miR-6812-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6816-5p 1 0 0
chr18:12329531|12329635 hsa-miR-1343-5p 1 1 0
chr18:12329531|12329635 hsa-miR-3180 1 0 0
chr18:12329531|12329635 hsa-miR-5001-5p 1 1 0
chr18:12329531|12329635 hsa-miR-6726-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6743-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6754-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6756-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6879-5p 1 0 0
chr18:12329531|12329635 hsa-miR-3620-5p 1 0 0
chr18:12329531|12329635 hsa-miR-4728-5p 1 0 0
chr18:12329531|12329635 hsa-miR-4745-5p 1 0 0
chr18:12329531|12329635 hsa-miR-939-5p 1 0 0
chr18:12329531|12329635 hsa-miR-3199 1 0 0
chr18:12329531|12329635 hsa-miR-1238-5p 1 0 0
chr18:12329531|12329635 hsa-miR-4758-5p 1 0 0
chr18:12329531|12329635 hsa-miR-3198 1 0 0
chr18:12329531|12329635 hsa-miR-6739-5p 0 1 0
chr18:12329531|12329635 hsa-miR-6856-5p 1 0 0
chr18:12329531|12329635 hsa-miR-6891-5p 1 1 0
chr18:12329531|12329635 hsa-miR-4756-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr18:12329531|12329635
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MASLWASSWQLSHPGAPLSPFPAPCSSP
Nucleotide Sequence ATGGCCTCCCTCTGGGCCTCTAGTTGGCAACTTTCTCACCCGGGGGCTCCTCTTTCTCCTTTTCCCGCTCCTTGTTCCAGTCCTTAA
CircID chr18:12329531|12329635
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MRWPPSGPLVGNFLTRGLLFLLFPLLVPVLK
Nucleotide Sequence CTGAGATGGCCTCCCTCTGGGCCTCTAGTTGGCAACTTTCTCACCCGGGGGCTCCTCTTTCTCCTTTTCCCGCTCCTTGTTCCAGTCCTTAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab