CircRNA Information

General Information
circRNA Basic Information
CircID chr18:24127805|24128004
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CATGCCCAGCTACATTGTAAACATGTTTGTTTTCTAGGTGCTGCAGGCAGAGTGATCCTATTAAAACCTAATCATGTTGTGTCACTCTGCTTCCCAGAATCCTCTGTGGTCTCTTATCTCATTCAGAATAAAAGCCCAAGTCCATTCAGCAGCAGGCAGTGCTCCCAGTCTGTAACCCTCGAGGCCATTGTCCCTCCCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr18:24127805|24128004 hsa-miR-107 0 0 1
chr18:24127805|24128004 hsa-miR-370-5p 0 0 1
chr18:24127805|24128004 hsa-miR-370-3p 0 0 1
chr18:24127805|24128004 hsa-miR-495-5p 0 0 1
chr18:24127805|24128004 hsa-miR-495-3p 0 0 1
chr18:24127805|24128004 hsa-miR-570-5p 0 0 1
chr18:24127805|24128004 hsa-miR-570-3p 0 0 1
chr18:24127805|24128004 hsa-miR-612 0 0 1
chr18:24127805|24128004 hsa-miR-633 0 0 1
chr18:24127805|24128004 hsa-miR-635 0 0 1
chr18:24127805|24128004 hsa-miR-920 0 0 1
chr18:24127805|24128004 hsa-miR-1321 0 0 1
chr18:24127805|24128004 hsa-miR-1184 0 1 1
chr18:24127805|24128004 hsa-miR-140-3p 0 0 1
chr18:24127805|24128004 hsa-miR-103 0 0 1
chr18:24127805|24128004 hsa-miR-1285 0 0 1
chr18:24127805|24128004 hsa-miR-637 1 0 0
chr18:24127805|24128004 hsa-miR-658 1 0 0
chr18:24127805|24128004 hsa-miR-762 1 0 0
chr18:24127805|24128004 hsa-miR-759 0 1 0
chr18:24127805|24128004 hsa-miR-4441 0 1 0
chr18:24127805|24128004 hsa-miR-4450 0 1 0
chr18:24127805|24128004 hsa-miR-4522 0 1 0
chr18:24127805|24128004 hsa-miR-1587 1 0 0
chr18:24127805|24128004 hsa-miR-4674 1 0 0
chr18:24127805|24128004 hsa-miR-4739 1 0 0
chr18:24127805|24128004 hsa-miR-6081 1 0 0
chr18:24127805|24128004 hsa-miR-8077 1 0 0
chr18:24127805|24128004 hsa-miR-4687-3p 1 0 0
chr18:24127805|24128004 hsa-miR-1236-5p 0 1 0
chr18:24127805|24128004 hsa-miR-4786-5p 0 1 0
chr18:24127805|24128004 hsa-miR-4474-3p 0 1 0
chr18:24127805|24128004 hsa-miR-3126-5p 0 1 0
chr18:24127805|24128004 hsa-miR-7109-5p 1 0 0
chr18:24127805|24128004 hsa-miR-1226-5p 1 0 0
chr18:24127805|24128004 hsa-miR-204-3p 0 1 0
chr18:24127805|24128004 hsa-miR-767-5p 1 0 0
chr18:24127805|24128004 hsa-miR-6847-5p 0 1 0
chr18:24127805|24128004 hsa-miR-149-3p 1 1 0
chr18:24127805|24128004 hsa-miR-6828-5p 0 1 0
chr18:24127805|24128004 hsa-miR-6892-5p 0 1 0
chr18:24127805|24128004 hsa-miR-216a-3p 0 1 0
chr18:24127805|24128004 hsa-miR-1911-5p 1 0 0
chr18:24127805|24128004 hsa-miR-329-5p 0 1 0
chr18:24127805|24128004 hsa-miR-1207-5p 1 0 0
chr18:24127805|24128004 hsa-miR-6816-5p 1 0 0
chr18:24127805|24128004 hsa-miR-6754-5p 0 1 0
chr18:24127805|24128004 hsa-miR-1249-5p 1 1 0
chr18:24127805|24128004 hsa-miR-6774-5p 1 0 0
chr18:24127805|24128004 hsa-miR-6779-5p 1 0 0
chr18:24127805|24128004 hsa-miR-6780a-5p 1 0 0
chr18:24127805|24128004 hsa-miR-6797-5p 1 1 0
chr18:24127805|24128004 hsa-miR-3620-5p 1 0 0
chr18:24127805|24128004 hsa-miR-4728-5p 1 1 0
chr18:24127805|24128004 hsa-miR-5196-5p 1 0 0
chr18:24127805|24128004 hsa-miR-10392-5p 1 0 0
chr18:24127805|24128004 hsa-miR-328-5p 1 0 0
chr18:24127805|24128004 hsa-miR-4749-5p 1 0 0
chr18:24127805|24128004 hsa-miR-6795-5p 1 0 0
chr18:24127805|24128004 hsa-miR-6883-5p 1 1 0
chr18:24127805|24128004 hsa-miR-6887-5p 1 0 0
chr18:24127805|24128004 hsa-miR-6885-5p 1 0 0
chr18:24127805|24128004 hsa-miR-5586-3p 0 1 0
chr18:24127805|24128004 hsa-miR-324-3p 1 0 0
chr18:24127805|24128004 hsa-miR-4646-5p 0 1 0
chr18:24127805|24128004 hsa-miR-6785-5p 1 0 0
chr18:24127805|24128004 hsa-miR-4667-5p 0 1 0
chr18:24127805|24128004 hsa-miR-6762-5p 1 0 0
chr18:24127805|24128004 hsa-miR-6529-5p 1 0 0
chr18:24127805|24128004 hsa-miR-10400-3p 1 0 0
chr18:24127805|24128004 hsa-miR-4756-5p 1 0 0
chr18:24127805|24128004 hsa-miR-450b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr18:24127805|24128004
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MLCHSASQNPLWSLISFRIKAQVHSAAGSAPSL
Nucleotide Sequence ATGTTGTGTCACTCTGCTTCCCAGAATCCTCTGTGGTCTCTTATCTCATTCAGAATAAAAGCCCAAGTCCATTCAGCAGCAGGCAGTGCTCCCAGTCTGTAA
CircID chr18:24127805|24128004
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MGALPAAEWTWAFILNEIRDHRGFWEAE
Nucleotide Sequence CTGGGAGCACTGCCTGCTGCTGAATGGACTTGGGCTTTTATTCTGAATGAGATAAGAGACCACAGAGGATTCTGGGAAGCAGAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab