CircRNA Information

General Information
circRNA Basic Information
CircID chr18:26476515|26501250
Strand -
CircType exon
Host Gene ENSG00000134504.12;
Algorism find_circ;CIRI2;DCC;
Sequence GACAGTCGGCCCAATATGTCAAGACCTCTGATCACTAGATCCCCTGCATCTCCACTGAACAACCAAGGCATCCCTACTCCAGCACAACTCACAAAATCCAATGCGCCTGTCCACATTGATGTGGGCGGCCACATGTACACCAGCAGCCTGGCCACCCTCACCAAATACCCTGAATCCAGCCATGGAAGCAGCTTTACATCTGGATTCTTGCCTGGATGACTCCCGTCTCAGGGGACTCCTGGCCTGCACCTTCTCCTCCTTTATCTTAAATACCCCAGCCGGTCACAAGTTCCGAGACATCCTTATCATTAGGAGATATCTTTAAGAATTTGTCAAGACTCTTTGAAACAAGCCTTACAAAGTAACTTCTGTTTCAGCTGCTAATACCTAAAGCAAATGACGCTGCTCAGAATCGGAAGACTTTTTGATGGTACAGAGCCCATTGTTTTGGACAGTCTCAAACAGCACTATTTCATTGACAGAGATGGACAGATGTTCAGATATATCTTGAATTTTCTACGAACATCCAAACTCCTCATTCCTGATGATTTCAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr18:26476515|26501250 hsa-miR-10a-5p 0 0 1
chr18:26476515|26501250 hsa-miR-10a-3p 0 0 1
chr18:26476515|26501250 hsa-miR-10b-5p 0 0 1
chr18:26476515|26501250 hsa-miR-10b-3p 0 0 1
chr18:26476515|26501250 hsa-miR-498-5p 0 0 1
chr18:26476515|26501250 hsa-miR-498-3p 0 0 1
chr18:26476515|26501250 hsa-miR-588 0 0 1
chr18:26476515|26501250 hsa-miR-634 0 0 1
chr18:26476515|26501250 hsa-miR-766-5p 0 0 1
chr18:26476515|26501250 hsa-miR-766-3p 0 0 1
chr18:26476515|26501250 hsa-miR-1226-5p 0 0 1
chr18:26476515|26501250 hsa-miR-1226-3p 0 0 1
chr18:26476515|26501250 hsa-miR-1200 0 0 1
chr18:26476515|26501250 hsa-miR-105-5p 0 1 1
chr18:26476515|26501250 hsa-miR-150-3p 0 1 1
chr18:26476515|26501250 hsa-miR-214-5p 0 1 1
chr18:26476515|26501250 hsa-miR-7-5p 0 1 1
chr18:26476515|26501250 hsa-miR-148a-5p 0 1 1
chr18:26476515|26501250 hsa-miR-28-3p 0 0 1
chr18:26476515|26501250 hsa-miR-299-3p 0 0 1
chr18:26476515|26501250 hsa-miR-324-5p 0 0 1
chr18:26476515|26501250 hsa-miR-508-5p 0 1 1
chr18:26476515|26501250 hsa-miR-331-3p 0 0 1
chr18:26476515|26501250 hsa-miR-34c-3p 0 0 1
chr18:26476515|26501250 hsa-miR-338-3p 0 0 1
chr18:26476515|26501250 hsa-miR-371-5p 0 0 1
chr18:26476515|26501250 hsa-miR-7 0 0 1
chr18:26476515|26501250 hsa-miR-3131 1 0 0
chr18:26476515|26501250 hsa-miR-6125 1 0 0
chr18:26476515|26501250 hsa-miR-8087 0 1 0
chr18:26476515|26501250 hsa-miR-6746-5p 1 0 0
chr18:26476515|26501250 hsa-miR-6759-5p 0 1 0
chr18:26476515|26501250 hsa-miR-6841-3p 1 0 0
chr18:26476515|26501250 hsa-miR-6716-3p 0 1 0
chr18:26476515|26501250 hsa-miR-345-3p 0 1 0
chr18:26476515|26501250 hsa-miR-1228-5p 0 1 0
chr18:26476515|26501250 hsa-miR-6771-5p 1 0 0
chr18:26476515|26501250 hsa-miR-3190-5p 0 1 0
chr18:26476515|26501250 hsa-miR-34b-3p 0 1 0
chr18:26476515|26501250 hsa-miR-6865-3p 0 1 0
chr18:26476515|26501250 hsa-miR-4520-2-3p 0 1 0
chr18:26476515|26501250 hsa-miR-4787-3p 0 1 0
chr18:26476515|26501250 hsa-miR-4520-3p 0 1 0
chr18:26476515|26501250 hsa-miR-6799-3p 1 0 0
chr18:26476515|26501250 hsa-miR-520a-5p 0 1 0
chr18:26476515|26501250 hsa-miR-6801-3p 0 1 0
chr18:26476515|26501250 hsa-miR-10392-3p 1 0 0
chr18:26476515|26501250 hsa-miR-4701-5p 0 1 0
chr18:26476515|26501250 hsa-miR-1234-3p 0 1 0
chr18:26476515|26501250 hsa-miR-7155-3p 0 1 0
chr18:26476515|26501250 hsa-miR-7157-5p 1 0 0
chr18:26476515|26501250 hsa-miR-181b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr18:26476515|26501250
ORF Type ORF1
Protein Length 75
Nucleotide Length 225
Protein Sequence MRLSTLMWAATCTPAAWPPSPNTLNPAMEAALHLDSCLDDSRLRGLLACTFSSFILNTPAGHKFRDILIIRRYL*
Nucleotide Sequence ATGCGCCTGTCCACATTGATGTGGGCGGCCACATGTACACCAGCAGCCTGGCCACCCTCACCAAATACCCTGAATCCAGCCATGGAAGCAGCTTTACATCTGGATTCTTGCCTGGATGACTCCCGTCTCAGGGGACTCCTGGCCTGCACCTTCTCCTCCTTTATCTTAAATACCCCAGCCGGTCACAAGTTCCGAGACATCCTTATCATTAGGAGATATCTTTAA
CircID chr18:26476515|26501250
ORF Type ORF2
Protein Length 68
Nucleotide Length 204
Protein Sequence MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESSHGSSFTSGFLPG*
Nucleotide Sequence ATGTCAAGACCTCTGATCACTAGATCCCCTGCATCTCCACTGAACAACCAAGGCATCCCTACTCCAGCACAACTCACAAAATCCAATGCGCCTGTCCACATTGATGTGGGCGGCCACATGTACACCAGCAGCCTGGCCACCCTCACCAAATACCCTGAATCCAGCCATGGAAGCAGCTTTACATCTGGATTCTTGCCTGGATGA
CircID chr18:26476515|26501250
ORF Type ORF3
Protein Length 55
Nucleotide Length 165
Protein Sequence MAGFRVFGEGGQAAGVHVAAHINVDRRIGFCELCWSRDALVVQWRCRGSSDQRS*
Nucleotide Sequence ATGGCTGGATTCAGGGTATTTGGTGAGGGTGGCCAGGCTGCTGGTGTACATGTGGCCGCCCACATCAATGTGGACAGGCGCATTGGATTTTGTGAGTTGTGCTGGAGTAGGGATGCCTTGGTTGTTCAGTGGAGATGCAGGGGATCTAGTGATCAGAGGTCTTGA
CircID chr18:26476515|26501250
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MTLLRIGRLFDGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFK
Nucleotide Sequence ATGACGCTGCTCAGAATCGGAAGACTTTTTGATGGTACAGAGCCCATTGTTTTGGACAGTCTCAAACAGCACTATTTCATTGACAGAGATGGACAGATGTTCAGATATATCTTGAATTTTCTACGAACATCCAAACTCCTCATTCCTGATGATTTCAAG
CircID chr18:26476515|26501250
ORF Type ORF5
Protein Length 44
Nucleotide Length 132
Protein Sequence MWPPTSMWTGALDFVSCAGVGMPWLFSGDAGDLVIRGLDILGRL
Nucleotide Sequence ATGTGGCCGCCCACATCAATGTGGACAGGCGCATTGGATTTTGTGAGTTGTGCTGGAGTAGGGATGCCTTGGTTGTTCAGTGGAGATGCAGGGGATCTAGTGATCAGAGGTCTTGACATATTGGGCCGACTG
CircID chr18:26476515|26501250
ORF Type ORF1
Protein Length 80
Nucleotide Length 243
Protein Sequence MSISVNEIVLFETVQNNGLCTIKKSSDSGFRVFGEGGQAAGVHVAAHINVDRRIGFCELCWSRDALVVQWRCRGSSDQRS
Nucleotide Sequence CTGTCCATCTCTGTCAATGAAATAGTGCTGTTTGAGACTGTCCAAAACAATGGGCTCTGTACCATCAAAAAGTCTTCCGATTCTGGATTCAGGGTATTTGGTGAGGGTGGCCAGGCTGCTGGTGTACATGTGGCCGCCCACATCAATGTGGACAGGCGCATTGGATTTTGTGAGTTGTGCTGGAGTAGGGATGCCTTGGTTGTTCAGTGGAGATGCAGGGGATCTAGTGATCAGAGGTCTTGA
CircID chr18:26476515|26501250
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence LKSSGMRSLDVRRKFKIYLNICPSLSMK
Nucleotide Sequence TTGAAATCATCAGGAATGAGGAGTTTGGATGTTCGTAGAAAATTCAAGATATATCTGAACATCTGTCCATCTCTGTCAATGAAATAG
CircID chr18:26476515|26501250
ORF Type ORF3
Protein Length 76
Nucleotide Length 228
Protein Sequence MRLSKTMGSVPSKSLPILDSGYLVRVARLLVYMWPPTSMWTGALDFVSCAGVGMPWLFSGDAGDLVIRGLDILGRL
Nucleotide Sequence TTGAGACTGTCCAAAACAATGGGCTCTGTACCATCAAAAAGTCTTCCGATTCTGGATTCAGGGTATTTGGTGAGGGTGGCCAGGCTGCTGGTGTACATGTGGCCGCCCACATCAATGTGGACAGGCGCATTGGATTTTGTGAGTTGTGCTGGAGTAGGGATGCCTTGGTTGTTCAGTGGAGATGCAGGGGATCTAGTGATCAGAGGTCTTGACATATTGGGCCGACTG
CircID chr18:26476515|26501250
ORF Type ORF4
Protein Length 103
Nucleotide Length 309
Protein Sequence MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLFDGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFK
Nucleotide Sequence ATGTCAAGACCTCTGATCACTAGATCCCCTGCATCTCCACTGAACAACCAAGGCATCCCTACTCCAGCACAACTCACAAAATCCAATGCGCCTGTCCACATTGATGTGGGCGGCCACATGTACACCAGCAGCCTGGCCACCCTCACCAAATACCCTGAATCCAGAATCGGAAGACTTTTTGATGGTACAGAGCCCATTGTTTTGGACAGTCTCAAACAGCACTATTTCATTGACAGAGATGGACAGATGTTCAGATATATCTTGAATTTTCTACGAACATCCAAACTCCTCATTCCTGATGATTTCAAG
CircID chr18:26476515|26501250
ORF Type ORF5
Protein Length 59
Nucleotide Length 180
Protein Sequence MRLSTLMWAATCTPAAWPPSPNTLNPESEDFLMVQSPLFWTVSNSTISLTEMDRCSDIS
Nucleotide Sequence ATGCGCCTGTCCACATTGATGTGGGCGGCCACATGTACACCAGCAGCCTGGCCACCCTCACCAAATACCCTGAATCCAGAATCGGAAGACTTTTTGATGGTACAGAGCCCATTGTTTTGGACAGTCTCAAACAGCACTATTTCATTGACAGAGATGGACAGATGTTCAGATATATCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr18:26476515|26501250 NOP56 1 0 1
chr18:26476515|26501250 ELAVL1 4 0 0
chr18:26476515|26501250 PRPF8 0 1 0
chr18:26476515|26501250 CPSF7 1 0 0
chr18:26476515|26501250 CPSF3 0 1 0
chr18:26476515|26501250 FUS 2 1 0
chr18:26476515|26501250 NOP58 0 0 2
chr18:26476515|26501250 ADAR 1 0 0
chr18:26476515|26501250 U2AF2 6 2 0
chr18:26476515|26501250 DDX54 0 0 1
chr18:26476515|26501250 PTBP1 1 0 0
chr18:26476515|26501250 HNRNPC 8 10 0
chr18:26476515|26501250 HNRNPA1 1 0 0
chr18:26476515|26501250 LIN28B 0 0 1
chr18:26476515|26501250 IGF2BP1 0 0 1
chr18:26476515|26501250 IGF2BP3 0 0 1
chr18:26476515|26501250 IGF2BP2 0 1 4
chr18:26476515|26501250 TARDBP 2 1 0
chr18:26476515|26501250 BUD13 1 0 0
chr18:26476515|26501250 CSTF2T 0 0 1
chr18:26476515|26501250 CSTF2 1 0 1
chr18:26476515|26501250 TIAL1 1 0 0
chr18:26476515|26501250 EIF4A3 1 1 3
chr18:26476515|26501250 AGO2 2 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab