CircRNA Information

General Information
circRNA Basic Information
CircID chr18:2743787|2743928
Strand +
CircType exon
Host Gene ENSG00000101596.13;
Algorism CIRI2;
Sequence CTCCTTTAGTTCTGGCCAGTCTATAAGGAGAAGTTTAGCAGGAGGTCCAGAAATTAGTTGCACTCGAATAAAGTCAGAAAACTCACGCCAAGTAAAACAAAGATCCTTATTTCCAGGAGGACCTGGAATAAATTTGATGCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr18:2743787|2743928 hsa-miR-130a-5p 0 0 1
chr18:2743787|2743928 hsa-miR-130a-3p 0 0 1
chr18:2743787|2743928 hsa-miR-301a-5p 0 0 1
chr18:2743787|2743928 hsa-miR-301a-3p 0 0 1
chr18:2743787|2743928 hsa-miR-130b-5p 0 0 1
chr18:2743787|2743928 hsa-miR-130b-3p 0 0 1
chr18:2743787|2743928 hsa-miR-370-5p 0 0 1
chr18:2743787|2743928 hsa-miR-370-3p 0 0 1
chr18:2743787|2743928 hsa-miR-345-5p 0 0 1
chr18:2743787|2743928 hsa-miR-345-3p 0 0 1
chr18:2743787|2743928 hsa-miR-422a 0 0 1
chr18:2743787|2743928 hsa-miR-492 0 0 1
chr18:2743787|2743928 hsa-miR-193b-5p 0 0 1
chr18:2743787|2743928 hsa-miR-193b-3p 0 0 1
chr18:2743787|2743928 hsa-miR-454-5p 0 0 1
chr18:2743787|2743928 hsa-miR-454-3p 0 0 1
chr18:2743787|2743928 hsa-miR-890 0 0 1
chr18:2743787|2743928 hsa-miR-891b 0 0 1
chr18:2743787|2743928 hsa-miR-301b-5p 0 0 1
chr18:2743787|2743928 hsa-miR-301b-3p 0 0 1
chr18:2743787|2743928 hsa-miR-1299 0 0 1
chr18:2743787|2743928 hsa-miR-875-3p 0 1 1
chr18:2743787|2743928 hsa-miR-193a-3p 0 0 1
chr18:2743787|2743928 hsa-miR-378 0 0 1
chr18:2743787|2743928 hsa-miR-516b 0 0 1
chr18:2743787|2743928 hsa-miR-151-3p 0 0 1
chr18:2743787|2743928 hsa-miR-5706 0 1 0
chr18:2743787|2743928 hsa-miR-4435 0 1 0
chr18:2743787|2743928 hsa-miR-6850-5p 1 0 0
chr18:2743787|2743928 hsa-miR-939-3p 1 0 0
chr18:2743787|2743928 hsa-miR-660-3p 0 1 0
chr18:2743787|2743928 hsa-miR-3074-5p 1 1 0
chr18:2743787|2743928 hsa-miR-6787-5p 1 0 0
chr18:2743787|2743928 hsa-miR-6893-3p 1 0 0
chr18:2743787|2743928 hsa-miR-4659b-3p 0 1 0
chr18:2743787|2743928 hsa-miR-4659a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr18:2743787|2743928
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MHSNKVRKLTPSKTKILISRRTWNKFDA
Nucleotide Sequence TTGCACTCGAATAAAGTCAGAAAACTCACGCCAAGTAAAACAAAGATCCTTATTTCCAGGAGGACCTGGAATAAATTTGATGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab