CircRNA Information

General Information
circRNA Basic Information
CircID chr18:36109665|36111152
Strand +
CircType exon
Host Gene ENSG00000141424.11;
Algorism CIRI2;
Sequence AGGAATTTTCATTGGTCATTATGCTGAAAATGTTTCTATGTGGATATTTGCACTTACTGCTGGCTTATTCATGTATGTTGCTCTGGTTGATATGGTACCTGAAATGCTGCACAATGATGCTAGTGACCATGGATGTAGCCGCTGGGGGTATTTCTTTTTACAGAATGCTGGGATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr18:36109665|36111152 hsa-miR-19a-5p 0 0 1
chr18:36109665|36111152 hsa-miR-19a-3p 0 0 1
chr18:36109665|36111152 hsa-miR-107 1 1 1
chr18:36109665|36111152 hsa-miR-221-5p 0 0 1
chr18:36109665|36111152 hsa-miR-221-3p 0 0 1
chr18:36109665|36111152 hsa-miR-222-5p 0 0 1
chr18:36109665|36111152 hsa-miR-222-3p 0 0 1
chr18:36109665|36111152 hsa-miR-130a-5p 0 0 1
chr18:36109665|36111152 hsa-miR-130a-3p 0 0 1
chr18:36109665|36111152 hsa-miR-302a-5p 0 0 1
chr18:36109665|36111152 hsa-miR-302a-3p 0 0 1
chr18:36109665|36111152 hsa-miR-301a-5p 0 0 1
chr18:36109665|36111152 hsa-miR-301a-3p 0 0 1
chr18:36109665|36111152 hsa-miR-130b-5p 0 0 1
chr18:36109665|36111152 hsa-miR-130b-3p 0 0 1
chr18:36109665|36111152 hsa-miR-302b-5p 0 0 1
chr18:36109665|36111152 hsa-miR-302b-3p 0 0 1
chr18:36109665|36111152 hsa-miR-302c-5p 0 0 1
chr18:36109665|36111152 hsa-miR-302c-3p 0 0 1
chr18:36109665|36111152 hsa-miR-302d-5p 0 0 1
chr18:36109665|36111152 hsa-miR-302d-3p 0 0 1
chr18:36109665|36111152 hsa-miR-376c-5p 0 0 1
chr18:36109665|36111152 hsa-miR-376c-3p 0 0 1
chr18:36109665|36111152 hsa-miR-372-5p 0 0 1
chr18:36109665|36111152 hsa-miR-372-3p 0 0 1
chr18:36109665|36111152 hsa-miR-373-5p 0 0 1
chr18:36109665|36111152 hsa-miR-373-3p 0 0 1
chr18:36109665|36111152 hsa-miR-494-5p 0 0 1
chr18:36109665|36111152 hsa-miR-494-3p 0 0 1
chr18:36109665|36111152 hsa-miR-520e-5p 0 0 1
chr18:36109665|36111152 hsa-miR-520e-3p 0 0 1
chr18:36109665|36111152 hsa-miR-520b-5p 0 0 1
chr18:36109665|36111152 hsa-miR-520b-3p 0 0 1
chr18:36109665|36111152 hsa-miR-454-5p 0 0 1
chr18:36109665|36111152 hsa-miR-454-3p 0 0 1
chr18:36109665|36111152 hsa-miR-301b-5p 0 0 1
chr18:36109665|36111152 hsa-miR-301b-3p 0 0 1
chr18:36109665|36111152 hsa-miR-1179 0 0 1
chr18:36109665|36111152 hsa-miR-302e 0 0 1
chr18:36109665|36111152 hsa-miR-361-3p 0 0 1
chr18:36109665|36111152 hsa-miR-338-3p 0 0 1
chr18:36109665|36111152 hsa-miR-520d-3p 0 0 1
chr18:36109665|36111152 hsa-miR-519b-3p 0 0 1
chr18:36109665|36111152 hsa-miR-519c-3p 0 0 1
chr18:36109665|36111152 hsa-miR-520a-3p 0 0 1
chr18:36109665|36111152 hsa-miR-520c-3p 0 0 1
chr18:36109665|36111152 hsa-miR-103 0 0 1
chr18:36109665|36111152 hsa-miR-19b 0 0 1
chr18:36109665|36111152 hsa-miR-519a 0 0 1
chr18:36109665|36111152 hsa-miR-630 0 1 0
chr18:36109665|36111152 hsa-miR-4289 0 1 0
chr18:36109665|36111152 hsa-miR-3943 1 0 0
chr18:36109665|36111152 hsa-miR-6841-3p 1 0 0
chr18:36109665|36111152 hsa-miR-6516-5p 1 0 0
chr18:36109665|36111152 hsa-miR-103a-3p 1 1 0
chr18:36109665|36111152 hsa-miR-3944-5p 1 0 0
chr18:36109665|36111152 hsa-miR-6501-3p 0 1 0
chr18:36109665|36111152 hsa-miR-5580-3p 1 0 0
chr18:36109665|36111152 hsa-miR-3085-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr18:36109665|36111152
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MWIFALTAGLFMYVALVDMVPEMLHNDASDHGCSRWGYFFLQNAGM
Nucleotide Sequence ATGTGGATATTTGCACTTACTGCTGGCTTATTCATGTATGTTGCTCTGGTTGATATGGTACCTGAAATGCTGCACAATGATGCTAGTGACCATGGATGTAGCCGCTGGGGGTATTTCTTTTTACAGAATGCTGGGATG
CircID chr18:36109665|36111152
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MVIMLKMFLCGYLHLLLAYSCMLLWLIWYLKCCTMMLVTMDVAAGGISFYRMLG
Nucleotide Sequence TTGGTCATTATGCTGAAAATGTTTCTATGTGGATATTTGCACTTACTGCTGGCTTATTCATGTATGTTGCTCTGGTTGATATGGTACCTGAAATGCTGCACAATGATGCTAGTGACCATGGATGTAGCCGCTGGGGGTATTTCTTTTTACAGAATGCTGGGA
CircID chr18:36109665|36111152
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MCSISGTISTRATYMNKPAVSANIHIETFSA
Nucleotide Sequence TTGTGCAGCATTTCAGGTACCATATCAACCAGAGCAACATACATGAATAAGCCAGCAGTAAGTGCAAATATCCACATAGAAACATTTTCAGCATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab