CircNet

General Information

circRNA Basic Information

CircID	chr18:47896521\|47896809
Strand	-
CircType	Non-Repeat
Host Gene	ENSG00000175387.15;
Algorism	find_circ;CIRI2;DCC;
Sequence	GTTCGATACAAGAGGCTGTTTTCCTAGCGTGGCTTGCTGCCTTTGGTAAGAACATGTCGTCCATCTTGCCATTCACGCCGCCAGTTGTGAAGAGACTGCTGGGATGGAAGAAGTCAGCTGGTGGGTCTGGAGGAGCAGGCGGAGGAGAGCAGAATGGGCAGGAAGAAAAGTGGTGTGAGAAAGCAGTGAAAAGTCTGGTGAAGAAGCTAAAGAAAACAGGACGATTAGATGAGCTTGAGAAAGCCATCACCACTCAAAACTGTAATACTAAATGTGTTACCATACCAAG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr18:47896521\|47896809	hsa-miR-658	1	1	1
chr18:47896521\|47896809	hsa-miR-765	1	1	1
chr18:47896521\|47896809	hsa-miR-298	1	1	1
chr18:47896521\|47896809	hsa-miR-1183	1	1	1
chr18:47896521\|47896809	hsa-miR-1286	1	1	1
chr18:47896521\|47896809	hsa-miR-2278	1	1	1
chr18:47896521\|47896809	hsa-miR-3185	1	1	1
chr18:47896521\|47896809	hsa-miR-3937	1	1	1
chr18:47896521\|47896809	hsa-miR-4468	1	1	1
chr18:47896521\|47896809	hsa-miR-4506	1	1	1
chr18:47896521\|47896809	hsa-miR-4519	1	1	1
chr18:47896521\|47896809	hsa-miR-5192	1	1	1
chr18:47896521\|47896809	hsa-miR-6081	1	1	1
chr18:47896521\|47896809	hsa-miR-6165	1	1	1
chr18:47896521\|47896809	hsa-miR-138-5p	1	1	1
chr18:47896521\|47896809	hsa-miR-22-3p	1	1	1
chr18:47896521\|47896809	hsa-miR-6894-5p	1	1	1
chr18:47896521\|47896809	hsa-miR-4687-3p	1	1	1
chr18:47896521\|47896809	hsa-miR-25-5p	1	1	1
chr18:47896521\|47896809	hsa-miR-6510-5p	1	1	1
chr18:47896521\|47896809	hsa-miR-6728-5p	1	1	1
chr18:47896521\|47896809	hsa-miR-766-5p	1	1	1
chr18:47896521\|47896809	hsa-miR-5187-5p	1	1	1
chr18:47896521\|47896809	hsa-miR-4722-5p	1	1	1
chr18:47896521\|47896809	hsa-miR-7154-3p	1	1	1
chr18:47896521\|47896809	hsa-miR-6721-5p	1	1	1
chr18:47896521\|47896809	hsa-miR-6793-5p	1	1	1
chr18:47896521\|47896809	hsa-miR-6888-5p	1	1	1
chr18:47896521\|47896809	hsa-miR-6882-3p	1	1	1
chr18:47896521\|47896809	hsa-miR-185-5p	1	1	1
chr18:47896521\|47896809	hsa-miR-4690-5p	1	1	1
chr18:47896521\|47896809	hsa-miR-193a-5p	1	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr18:47896521\|47896809
ORF Type	ORF1
Protein Length	82
Nucleotide Length	246
Protein Sequence	MAFSSSSNRPVFFSFFTRLFTAFSHHFSSCPFCSPPPAPPDPPADFFHPSSLFTTGGVNGKMDDMFLPKAASHARKTASCIE
Nucleotide Sequence	ATGGCTTTCTCAAGCTCATCTAATCGTCCTGTTTTCTTTAGCTTCTTCACCAGACTTTTCACTGCTTTCTCACACCACTTTTCTTCCTGCCCATTCTGCTCTCCTCCGCCTGCTCCTCCAGACCCACCAGCTGACTTCTTCCATCCCAGCAGTCTCTTCACAACTGGCGGCGTGAATGGCAAGATGGACGACATGTTCTTACCAAAGGCAGCAAGCCACGCTAGGAAAACAGCCTCTTGTATCGAA

CircID	chr18:47896521\|47896809
ORF Type	ORF2
Protein Length	78
Nucleotide Length	234
Protein Sequence	MSSILPFTPPVVKRLLGWKKSAGGSGGAGGGEQNGQEEKWCEKAVKSLVKKLKKTGRLDELEKAITTQNCNTKCVTIP
Nucleotide Sequence	ATGTCGTCCATCTTGCCATTCACGCCGCCAGTTGTGAAGAGACTGCTGGGATGGAAGAAGTCAGCTGGTGGGTCTGGAGGAGCAGGCGGAGGAGAGCAGAATGGGCAGGAAGAAAAGTGGTGTGAGAAAGCAGTGAAAAGTCTGGTGAAGAAGCTAAAGAAAACAGGACGATTAGATGAGCTTGAGAAAGCCATCACCACTCAAAACTGTAATACTAAATGTGTTACCATACCA

CircID	chr18:47896521\|47896809
ORF Type	ORF3
Protein Length	58
Nucleotide Length	174
Protein Sequence	WLSQAHLIVLFSLASSPDFSLLSHTTFLPAHSALLRLLLQTHQLTSSIPAVSSQLAA*
Nucleotide Sequence	TGGCTTTCTCAAGCTCATCTAATCGTCCTGTTTTCTTTAGCTTCTTCACCAGACTTTTCACTGCTTTCTCACACCACTTTTCTTCCTGCCCATTCTGCTCTCCTCCGCCTGCTCCTCCAGACCCACCAGCTGACTTCTTCCATCCCAGCAGTCTCTTCACAACTGGCGGCGTGA

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr18:47896521\|47896809	NOP56	3	2	0
chr18:47896521\|47896809	MOV10	0	0	1
chr18:47896521\|47896809	ELAVL1	3	2	2
chr18:47896521\|47896809	SF3B4	1	0	0
chr18:47896521\|47896809	FAM120A	0	0	1
chr18:47896521\|47896809	CELF2	0	2	0
chr18:47896521\|47896809	PRPF8	1	3	4
chr18:47896521\|47896809	SRSF10	0	0	1
chr18:47896521\|47896809	FMR1	0	0	2
chr18:47896521\|47896809	CPSF6	0	0	2
chr18:47896521\|47896809	TROVE2	0	1	0
chr18:47896521\|47896809	FUS	1	1	0
chr18:47896521\|47896809	SRSF7	0	0	1
chr18:47896521\|47896809	SRSF1	2	0	5
chr18:47896521\|47896809	NOP58	0	2	1
chr18:47896521\|47896809	SRSF3	1	0	0
chr18:47896521\|47896809	U2AF1	6	1	1
chr18:47896521\|47896809	U2AF2	18	16	4
chr18:47896521\|47896809	SRSF9	0	0	1
chr18:47896521\|47896809	DDX54	0	1	6
chr18:47896521\|47896809	PCBP2	1	0	0
chr18:47896521\|47896809	HNRNPM	0	3	1
chr18:47896521\|47896809	AUH	0	1	0
chr18:47896521\|47896809	HNRNPC	0	1	0
chr18:47896521\|47896809	TRA2A	0	0	4
chr18:47896521\|47896809	KHSRP	1	8	0
chr18:47896521\|47896809	ZNF184	0	0	1
chr18:47896521\|47896809	HNRNPA1	1	0	0
chr18:47896521\|47896809	TIAL1	2	1	0
chr18:47896521\|47896809	SMNDC1	1	0	1
chr18:47896521\|47896809	MSI2	0	0	1
chr18:47896521\|47896809	ACIN1	0	0	3
chr18:47896521\|47896809	LIN28B	0	0	6
chr18:47896521\|47896809	RANGAP1	0	0	2
chr18:47896521\|47896809	SND1	0	0	1
chr18:47896521\|47896809	IGF2BP1	0	1	3
chr18:47896521\|47896809	IGF2BP3	1	1	4
chr18:47896521\|47896809	IGF2BP2	2	0	10
chr18:47896521\|47896809	HNRNPUL1	0	1	0
chr18:47896521\|47896809	TARDBP	0	4	0
chr18:47896521\|47896809	YTHDC1	0	0	1
chr18:47896521\|47896809	BUD13	1	0	3
chr18:47896521\|47896809	RBFOX2	0	2	1
chr18:47896521\|47896809	EIF4G2	0	0	1
chr18:47896521\|47896809	CSTF2T	0	0	1
chr18:47896521\|47896809	RBM27	1	0	0
chr18:47896521\|47896809	XRN2	0	0	1
chr18:47896521\|47896809	DKC1	0	1	0
chr18:47896521\|47896809	FBL	2	0	3
chr18:47896521\|47896809	EIF4A3	3	3	2
chr18:47896521\|47896809	AGO2	0	1	5

CircRNA Information