CircRNA Information

General Information
circRNA Basic Information
CircID chr18:49205805|49205986
Strand +
CircType exon
Host Gene ENSG00000266696.1;
Algorism CIRI2;
Sequence CTTAGTCAAACATGACTTACTGCTATAGATAGAAGTCTTACTCCACTGCAAACTTCTTCCAAATGTAAGAATTCGTTTCACAGCAACCCTGAAAGAGAGCACTTCTGTGTGCTGCTTACCTCAGAAGGCAGTAAAGCTCTTGCTGTTTCATTTTTAGAAAGATTAGAATATGTTAAGCCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr18:49205805|49205986 hsa-let-7b-5p 0 0 1
chr18:49205805|49205986 hsa-let-7b-3p 0 0 1
chr18:49205805|49205986 hsa-let-7c-5p 0 0 1
chr18:49205805|49205986 hsa-let-7c-3p 0 0 1
chr18:49205805|49205986 hsa-let-7d-5p 0 0 1
chr18:49205805|49205986 hsa-let-7d-3p 0 0 1
chr18:49205805|49205986 hsa-let-7e-5p 0 0 1
chr18:49205805|49205986 hsa-let-7e-3p 0 0 1
chr18:49205805|49205986 hsa-miR-15a-5p 0 0 1
chr18:49205805|49205986 hsa-miR-15a-3p 0 0 1
chr18:49205805|49205986 hsa-miR-98-5p 0 0 1
chr18:49205805|49205986 hsa-miR-98-3p 0 0 1
chr18:49205805|49205986 hsa-miR-224-5p 0 0 1
chr18:49205805|49205986 hsa-miR-224-3p 0 0 1
chr18:49205805|49205986 hsa-let-7g-5p 0 0 1
chr18:49205805|49205986 hsa-let-7g-3p 0 0 1
chr18:49205805|49205986 hsa-let-7i-5p 0 0 1
chr18:49205805|49205986 hsa-let-7i-3p 0 0 1
chr18:49205805|49205986 hsa-miR-15b-5p 0 0 1
chr18:49205805|49205986 hsa-miR-15b-3p 0 0 1
chr18:49205805|49205986 hsa-miR-195-5p 0 0 1
chr18:49205805|49205986 hsa-miR-195-3p 0 0 1
chr18:49205805|49205986 hsa-miR-302a-5p 0 0 1
chr18:49205805|49205986 hsa-miR-302a-3p 0 0 1
chr18:49205805|49205986 hsa-miR-302b-5p 0 0 1
chr18:49205805|49205986 hsa-miR-302b-3p 0 0 1
chr18:49205805|49205986 hsa-miR-302c-5p 0 0 1
chr18:49205805|49205986 hsa-miR-302c-3p 0 0 1
chr18:49205805|49205986 hsa-miR-302d-5p 0 0 1
chr18:49205805|49205986 hsa-miR-302d-3p 0 0 1
chr18:49205805|49205986 hsa-miR-372-5p 0 0 1
chr18:49205805|49205986 hsa-miR-372-3p 0 0 1
chr18:49205805|49205986 hsa-miR-373-5p 0 0 1
chr18:49205805|49205986 hsa-miR-373-3p 0 0 1
chr18:49205805|49205986 hsa-miR-335-5p 0 0 1
chr18:49205805|49205986 hsa-miR-335-3p 0 0 1
chr18:49205805|49205986 hsa-miR-424-5p 0 0 1
chr18:49205805|49205986 hsa-miR-424-3p 0 0 1
chr18:49205805|49205986 hsa-miR-202-5p 0 0 1
chr18:49205805|49205986 hsa-miR-202-3p 0 0 1
chr18:49205805|49205986 hsa-miR-494-5p 0 0 1
chr18:49205805|49205986 hsa-miR-494-3p 0 0 1
chr18:49205805|49205986 hsa-miR-497-5p 0 0 1
chr18:49205805|49205986 hsa-miR-497-3p 0 0 1
chr18:49205805|49205986 hsa-miR-520e-5p 0 0 1
chr18:49205805|49205986 hsa-miR-520e-3p 0 0 1
chr18:49205805|49205986 hsa-miR-520b-5p 0 0 1
chr18:49205805|49205986 hsa-miR-520b-3p 0 0 1
chr18:49205805|49205986 hsa-miR-600 0 0 1
chr18:49205805|49205986 hsa-miR-1237-5p 0 0 1
chr18:49205805|49205986 hsa-miR-1237-3p 0 0 1
chr18:49205805|49205986 hsa-miR-302e 0 0 1
chr18:49205805|49205986 hsa-miR-296-3p 0 1 1
chr18:49205805|49205986 hsa-miR-576-5p 0 0 1
chr18:49205805|49205986 hsa-miR-520d-3p 0 1 1
chr18:49205805|49205986 hsa-miR-520a-3p 0 0 1
chr18:49205805|49205986 hsa-miR-520c-3p 0 1 1
chr18:49205805|49205986 hsa-miR-548c-3p 0 0 1
chr18:49205805|49205986 hsa-miR-16 0 0 1
chr18:49205805|49205986 hsa-miR-7 0 0 1
chr18:49205805|49205986 hsa-let-7a 0 0 1
chr18:49205805|49205986 hsa-let-7f 0 0 1
chr18:49205805|49205986 hsa-miR-499-5p 0 0 1
chr18:49205805|49205986 hsa-miR-451b 0 1 0
chr18:49205805|49205986 hsa-miR-12119 0 1 0
chr18:49205805|49205986 hsa-miR-27a-5p 1 0 0
chr18:49205805|49205986 hsa-miR-6742-5p 1 0 0
chr18:49205805|49205986 hsa-miR-3127-5p 1 0 0
chr18:49205805|49205986 hsa-miR-6823-5p 0 1 0
chr18:49205805|49205986 hsa-miR-7162-3p 0 1 0
chr18:49205805|49205986 hsa-miR-16-5p 0 1 0
chr18:49205805|49205986 hsa-miR-520f-3p 0 1 0
chr18:49205805|49205986 hsa-miR-526b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr18:49205805|49205986
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MQTSSKCKNSFHSNPEREHFCVLLTSEGSKALAVSFLERLEYVKP
Nucleotide Sequence CTGCAAACTTCTTCCAAATGTAAGAATTCGTTTCACAGCAACCCTGAAAGAGAGCACTTCTGTGTGCTGCTTACCTCAGAAGGCAGTAAAGCTCTTGCTGTTTCATTTTTAGAAAGATTAGAATATGTTAAGCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab