CircRNA Information

General Information
circRNA Basic Information
CircID chr18:51084707|51084803
Strand +
CircType exon
Host Gene ENSG00000141646.12;
Algorism CIRI2;
Sequence CACCACCAAATCTGTCCCCAACCCCCAACTCACTTCTTCTAAACTGGGCTCTGCAGCCCACCAGGTTTTCATCATCTATAAGCATTCACACTTTTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr18:51084707|51084803 hsa-miR-570-5p 0 0 1
chr18:51084707|51084803 hsa-miR-570-3p 0 0 1
chr18:51084707|51084803 hsa-miR-571 0 0 1
chr18:51084707|51084803 hsa-miR-595 0 0 1
chr18:51084707|51084803 hsa-miR-541-5p 0 0 1
chr18:51084707|51084803 hsa-miR-541-3p 0 0 1
chr18:51084707|51084803 hsa-miR-1257 0 0 1
chr18:51084707|51084803 hsa-miR-1272 0 0 1
chr18:51084707|51084803 hsa-miR-1275 0 0 1
chr18:51084707|51084803 hsa-miR-490-3p 0 1 1
chr18:51084707|51084803 hsa-miR-654-5p 0 1 1
chr18:51084707|51084803 hsa-miR-876-3p 0 0 1
chr18:51084707|51084803 hsa-miR-323-5p 0 0 1
chr18:51084707|51084803 hsa-miR-219-1-3p 0 0 1
chr18:51084707|51084803 hsa-miR-762 1 0 0
chr18:51084707|51084803 hsa-miR-3147 1 0 0
chr18:51084707|51084803 hsa-miR-4259 1 1 0
chr18:51084707|51084803 hsa-miR-3911 1 0 0
chr18:51084707|51084803 hsa-miR-4498 1 0 0
chr18:51084707|51084803 hsa-miR-4507 1 0 0
chr18:51084707|51084803 hsa-miR-4516 1 0 0
chr18:51084707|51084803 hsa-miR-4525 1 0 0
chr18:51084707|51084803 hsa-miR-1587 1 0 0
chr18:51084707|51084803 hsa-miR-4651 1 0 0
chr18:51084707|51084803 hsa-miR-4658 1 0 0
chr18:51084707|51084803 hsa-miR-4689 1 0 0
chr18:51084707|51084803 hsa-miR-4741 1 0 0
chr18:51084707|51084803 hsa-miR-5572 1 0 0
chr18:51084707|51084803 hsa-miR-5787 1 0 0
chr18:51084707|51084803 hsa-miR-6086 1 0 0
chr18:51084707|51084803 hsa-miR-6127 1 0 0
chr18:51084707|51084803 hsa-miR-6129 1 0 0
chr18:51084707|51084803 hsa-miR-7704 1 0 0
chr18:51084707|51084803 hsa-miR-4433b-3p 1 0 0
chr18:51084707|51084803 hsa-miR-92a-1-5p 1 1 0
chr18:51084707|51084803 hsa-miR-4433a-3p 1 0 0
chr18:51084707|51084803 hsa-miR-6857-5p 1 0 0
chr18:51084707|51084803 hsa-miR-6089 1 0 0
chr18:51084707|51084803 hsa-miR-6730-5p 1 0 0
chr18:51084707|51084803 hsa-miR-6748-5p 1 0 0
chr18:51084707|51084803 hsa-miR-6793-5p 1 1 0
chr18:51084707|51084803 hsa-miR-6829-5p 1 1 0
chr18:51084707|51084803 hsa-miR-6810-5p 0 1 0
chr18:51084707|51084803 hsa-miR-7109-5p 1 0 0
chr18:51084707|51084803 hsa-miR-1229-5p 1 0 0
chr18:51084707|51084803 hsa-miR-193b-5p 1 0 0
chr18:51084707|51084803 hsa-miR-3691-5p 1 1 0
chr18:51084707|51084803 hsa-miR-296-3p 1 0 0
chr18:51084707|51084803 hsa-let-7b-5p 1 0 0
chr18:51084707|51084803 hsa-miR-4715-5p 1 0 0
chr18:51084707|51084803 hsa-miR-450a-2-3p 0 1 0
chr18:51084707|51084803 hsa-miR-5010-5p 1 0 0
chr18:51084707|51084803 hsa-miR-7846-3p 1 0 0
chr18:51084707|51084803 hsa-miR-6769b-5p 1 0 0
chr18:51084707|51084803 hsa-miR-6752-5p 1 0 0
chr18:51084707|51084803 hsa-miR-6756-5p 1 0 0
chr18:51084707|51084803 hsa-miR-6769a-5p 1 0 0
chr18:51084707|51084803 hsa-miR-6803-5p 1 1 0
chr18:51084707|51084803 hsa-miR-7110-5p 1 0 0
chr18:51084707|51084803 hsa-miR-6751-5p 1 0 0
chr18:51084707|51084803 hsa-miR-3620-5p 1 0 0
chr18:51084707|51084803 hsa-miR-4745-5p 1 0 0
chr18:51084707|51084803 hsa-miR-6846-5p 1 0 0
chr18:51084707|51084803 hsa-miR-6848-5p 1 0 0
chr18:51084707|51084803 hsa-miR-4758-5p 1 0 0
chr18:51084707|51084803 hsa-miR-3940-5p 1 0 0
chr18:51084707|51084803 hsa-miR-6855-5p 1 0 0
chr18:51084707|51084803 hsa-miR-6891-5p 1 0 0
chr18:51084707|51084803 hsa-miR-6790-5p 1 0 0
chr18:51084707|51084803 hsa-miR-6859-5p 1 0 0
chr18:51084707|51084803 hsa-miR-520d-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr18:51084707|51084803
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MSPTPNSLLLNWALQPTRFSSSISIHTF
Nucleotide Sequence CTGTCCCCAACCCCCAACTCACTTCTTCTAAACTGGGCTCTGCAGCCCACCAGGTTTTCATCATCTATAAGCATTCACACTTTT
CircID chr18:51084707|51084803
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MLIDDENLVGCRAQFRRSELGVGDRFGG
Nucleotide Sequence ATGCTTATAGATGATGAAAACCTGGTGGGCTGCAGAGCCCAGTTTAGAAGAAGTGAGTTGGGGGTTGGGGACAGATTTGGTGGT
CircID chr18:51084707|51084803
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MMKTWWAAEPSLEEVSWGLGTDLVV
Nucleotide Sequence ATGATGAAAACCTGGTGGGCTGCAGAGCCCAGTTTAGAAGAAGTGAGTTGGGGGTTGGGGACAGATTTGGTGGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab