CircRNA Information

General Information
circRNA Basic Information
CircID chr18:58919927|58920087
Strand -
CircType exon
Host Gene ENSG00000074657.12;
Algorism CIRI2;
Sequence CTCAGCAACAAATAAAGCAGGCAATAATCAATGCAGCAGCCTCGCAACCCCCCAAAAAGGTGTCTCGAGTCCAGGTGGTGTCGTCCTTGCAGAGTTCTGTGGTGGAAGCTTTCAACAAGGTGCTGAGCAGTGTCAATCCAGTCCCTGTTTACATCCCAAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr18:58919927|58920087 hsa-miR-30a-5p 0 0 1
chr18:58919927|58920087 hsa-miR-30a-3p 0 0 1
chr18:58919927|58920087 hsa-miR-33a-5p 0 0 1
chr18:58919927|58920087 hsa-miR-33a-3p 0 0 1
chr18:58919927|58920087 hsa-miR-30d-5p 0 0 1
chr18:58919927|58920087 hsa-miR-30d-3p 0 0 1
chr18:58919927|58920087 hsa-miR-30b-5p 0 0 1
chr18:58919927|58920087 hsa-miR-30b-3p 0 0 1
chr18:58919927|58920087 hsa-miR-137-5p 0 0 1
chr18:58919927|58920087 hsa-miR-137-3p 0 0 1
chr18:58919927|58920087 hsa-miR-30e-5p 0 0 1
chr18:58919927|58920087 hsa-miR-30e-3p 0 0 1
chr18:58919927|58920087 hsa-miR-422a 0 1 1
chr18:58919927|58920087 hsa-miR-488-5p 0 0 1
chr18:58919927|58920087 hsa-miR-488-3p 0 0 1
chr18:58919927|58920087 hsa-miR-619-5p 0 0 1
chr18:58919927|58920087 hsa-miR-619-3p 0 0 1
chr18:58919927|58920087 hsa-miR-33b-5p 0 0 1
chr18:58919927|58920087 hsa-miR-33b-3p 0 0 1
chr18:58919927|58920087 hsa-miR-653-5p 0 0 1
chr18:58919927|58920087 hsa-miR-653-3p 0 0 1
chr18:58919927|58920087 hsa-miR-1243 0 0 1
chr18:58919927|58920087 hsa-miR-1275 1 0 1
chr18:58919927|58920087 hsa-miR-485-5p 0 1 1
chr18:58919927|58920087 hsa-miR-767-3p 0 0 1
chr18:58919927|58920087 hsa-miR-140-3p 0 0 1
chr18:58919927|58920087 hsa-miR-628-5p 0 0 1
chr18:58919927|58920087 hsa-miR-769-3p 0 0 1
chr18:58919927|58920087 hsa-miR-450b-3p 0 0 1
chr18:58919927|58920087 hsa-miR-220b 0 0 1
chr18:58919927|58920087 hsa-miR-30c 0 0 1
chr18:58919927|58920087 hsa-miR-378 0 0 1
chr18:58919927|58920087 hsa-miR-514 0 0 1
chr18:58919927|58920087 hsa-miR-637 0 1 0
chr18:58919927|58920087 hsa-miR-378b 0 1 0
chr18:58919927|58920087 hsa-miR-378c 0 1 0
chr18:58919927|58920087 hsa-miR-378e 0 1 0
chr18:58919927|58920087 hsa-miR-378f 0 1 0
chr18:58919927|58920087 hsa-miR-378h 0 1 0
chr18:58919927|58920087 hsa-miR-4495 0 1 0
chr18:58919927|58920087 hsa-miR-4515 0 1 0
chr18:58919927|58920087 hsa-miR-378i 0 1 0
chr18:58919927|58920087 hsa-miR-4674 1 1 0
chr18:58919927|58920087 hsa-miR-4737 0 1 0
chr18:58919927|58920087 hsa-miR-5572 1 0 0
chr18:58919927|58920087 hsa-miR-6079 0 1 0
chr18:58919927|58920087 hsa-miR-6085 1 0 0
chr18:58919927|58920087 hsa-miR-8089 1 0 0
chr18:58919927|58920087 hsa-miR-135a-3p 1 0 0
chr18:58919927|58920087 hsa-miR-6747-5p 0 1 0
chr18:58919927|58920087 hsa-miR-7851-3p 1 0 0
chr18:58919927|58920087 hsa-miR-5187-5p 1 0 0
chr18:58919927|58920087 hsa-miR-6772-5p 1 1 0
chr18:58919927|58920087 hsa-miR-6796-5p 1 0 0
chr18:58919927|58920087 hsa-miR-7109-5p 1 1 0
chr18:58919927|58920087 hsa-miR-6740-5p 0 1 0
chr18:58919927|58920087 hsa-miR-3614-5p 1 0 0
chr18:58919927|58920087 hsa-miR-4708-3p 1 0 0
chr18:58919927|58920087 hsa-miR-4742-3p 1 0 0
chr18:58919927|58920087 hsa-miR-96-5p 0 1 0
chr18:58919927|58920087 hsa-miR-6812-5p 1 1 0
chr18:58919927|58920087 hsa-miR-5001-5p 1 0 0
chr18:58919927|58920087 hsa-miR-6752-5p 1 0 0
chr18:58919927|58920087 hsa-miR-6803-5p 1 0 0
chr18:58919927|58920087 hsa-miR-6813-5p 1 0 0
chr18:58919927|58920087 hsa-miR-6751-5p 1 0 0
chr18:58919927|58920087 hsa-miR-3620-5p 1 0 0
chr18:58919927|58920087 hsa-miR-328-5p 1 0 0
chr18:58919927|58920087 hsa-miR-6795-5p 1 0 0
chr18:58919927|58920087 hsa-miR-6855-5p 1 0 0
chr18:58919927|58920087 hsa-miR-378a-3p 0 1 0
chr18:58919927|58920087 hsa-miR-487a-5p 0 1 0
chr18:58919927|58920087 hsa-miR-378d 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr18:58919927|58920087
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MQQPRNPPKRCLESRWCRPCRVLWWKLSTRC
Nucleotide Sequence ATGCAGCAGCCTCGCAACCCCCCAAAAAGGTGTCTCGAGTCCAGGTGGTGTCGTCCTTGCAGAGTTCTGTGGTGGAAGCTTTCAACAAGGTGCTGA
CircID chr18:58919927|58920087
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MQSSVVEAFNKVLSSVNPVPVYIPN
Nucleotide Sequence TTGCAGAGTTCTGTGGTGGAAGCTTTCAACAAGGTGCTGAGCAGTGTCAATCCAGTCCCTGTTTACATCCCAAAC
CircID chr18:58919927|58920087
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MQGRHHLDSRHLFGGLRGCCIDYCLLYLLL
Nucleotide Sequence CTGCAAGGACGACACCACCTGGACTCGAGACACCTTTTTGGGGGGTTGCGAGGCTGCTGCATTGATTATTGCCTGCTTTATTTGTTGCTG
CircID chr18:58919927|58920087
ORF Type ORF4
Protein Length 44
Nucleotide Length 135
Protein Sequence MTLLSTLLKASTTELCKDDTTWTRDTFLGGCEAAALIIACFICC
Nucleotide Sequence TTGACACTGCTCAGCACCTTGTTGAAAGCTTCCACCACAGAACTCTGCAAGGACGACACCACCTGGACTCGAGACACCTTTTTGGGGGGTTGCGAGGCTGCTGCATTGATTATTGCCTGCTTTATTTGTTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab