CircRNA Information

General Information
circRNA Basic Information
CircID chr18:79578068|79578214
Strand +
CircType exon
Host Gene ENSG00000267287.1;
Algorism CIRI2;
Sequence CTGCGGCTTAGTGGGCCCTGACTCCAGCCTGGCCAGCTCGGGGCCCAAACGATGCCTGTGGCTGCCTGGCCCCTGCAGCGTGGCACAGACGACAAGTGCATGGGGAGCAGACCTGGTGTCCATGAGCACCCAGGCAACGCGCCACCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr18:79578068|79578214 hsa-miR-661 1 1 1
chr18:79578068|79578214 hsa-miR-1227-5p 0 0 1
chr18:79578068|79578214 hsa-miR-1227-3p 0 0 1
chr18:79578068|79578214 hsa-miR-1205 0 0 1
chr18:79578068|79578214 hsa-miR-1282 0 0 1
chr18:79578068|79578214 hsa-miR-296-5p 0 0 1
chr18:79578068|79578214 hsa-miR-1289 0 0 1
chr18:79578068|79578214 hsa-miR-490-5p 0 0 1
chr18:79578068|79578214 hsa-miR-767-3p 0 0 1
chr18:79578068|79578214 hsa-miR-1254 0 0 1
chr18:79578068|79578214 hsa-miR-663a 1 0 0
chr18:79578068|79578214 hsa-miR-762 1 1 0
chr18:79578068|79578214 hsa-miR-1913 1 0 0
chr18:79578068|79578214 hsa-miR-4309 0 1 0
chr18:79578068|79578214 hsa-miR-4325 0 1 0
chr18:79578068|79578214 hsa-miR-3655 0 1 0
chr18:79578068|79578214 hsa-miR-3937 1 0 0
chr18:79578068|79578214 hsa-miR-4430 0 1 0
chr18:79578068|79578214 hsa-miR-3135b 0 1 0
chr18:79578068|79578214 hsa-miR-4673 0 1 0
chr18:79578068|79578214 hsa-miR-4692 0 1 0
chr18:79578068|79578214 hsa-miR-4755-3p 0 1 0
chr18:79578068|79578214 hsa-miR-6741-5p 0 1 0
chr18:79578068|79578214 hsa-miR-5589-5p 0 1 0
chr18:79578068|79578214 hsa-miR-6776-5p 0 1 0
chr18:79578068|79578214 hsa-miR-939-3p 1 0 0
chr18:79578068|79578214 hsa-miR-6772-3p 1 0 0
chr18:79578068|79578214 hsa-miR-4640-5p 1 1 0
chr18:79578068|79578214 hsa-miR-4733-3p 0 1 0
chr18:79578068|79578214 hsa-miR-937-5p 1 0 0
chr18:79578068|79578214 hsa-miR-6789-5p 1 0 0
chr18:79578068|79578214 hsa-miR-3120-5p 1 0 0
chr18:79578068|79578214 hsa-miR-4763-3p 1 0 0
chr18:79578068|79578214 hsa-miR-5001-5p 1 1 0
chr18:79578068|79578214 hsa-miR-6815-5p 0 1 0
chr18:79578068|79578214 hsa-miR-6722-3p 1 1 0
chr18:79578068|79578214 hsa-miR-6836-5p 1 0 0
chr18:79578068|79578214 hsa-miR-10396b-5p 1 0 0
chr18:79578068|79578214 hsa-miR-1909-3p 1 1 0
chr18:79578068|79578214 hsa-miR-4726-5p 0 1 0
chr18:79578068|79578214 hsa-miR-6845-5p 0 1 0
chr18:79578068|79578214 hsa-miR-3085-5p 0 1 0
chr18:79578068|79578214 hsa-miR-6773-5p 0 1 0
chr18:79578068|79578214 hsa-miR-6724-5p 1 1 0
chr18:79578068|79578214 hsa-miR-7107-3p 0 1 0
chr18:79578068|79578214 hsa-miR-6762-5p 0 1 0
chr18:79578068|79578214 hsa-miR-10394-5p 0 1 0
chr18:79578068|79578214 hsa-miR-6503-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr18:79578068|79578214
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MPVAAWPLQRGTDDKCMGSRPGVHEHPGNAPP
Nucleotide Sequence ATGCCTGTGGCTGCCTGGCCCCTGCAGCGTGGCACAGACGACAAGTGCATGGGGAGCAGACCTGGTGTCCATGAGCACCCAGGCAACGCGCCACCT
CircID chr18:79578068|79578214
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MASSGPKRCLWLPGPCSVAQTTSAWGADLVSMSTQATRH
Nucleotide Sequence CTGGCCAGCTCGGGGCCCAAACGATGCCTGTGGCTGCCTGGCCCCTGCAGCGTGGCACAGACGACAAGTGCATGGGGAGCAGACCTGGTGTCCATGAGCACCCAGGCAACGCGCCAC
CircID chr18:79578068|79578214
ORF Type ORF3
Protein Length 35
Nucleotide Length 108
Protein Sequence MTPAWPARGPNDACGCLAPAAWHRRQVHGEQTWCP
Nucleotide Sequence CTGACTCCAGCCTGGCCAGCTCGGGGCCCAAACGATGCCTGTGGCTGCCTGGCCCCTGCAGCGTGGCACAGACGACAAGTGCATGGGGAGCAGACCTGGTGTCCATGA
CircID chr18:79578068|79578214
ORF Type ORF4
Protein Length 41
Nucleotide Length 123
Protein Sequence MDTRSAPHALVVCATLQGPGSHRHRLGPELARLESGPTKPQ
Nucleotide Sequence ATGGACACCAGGTCTGCTCCCCATGCACTTGTCGTCTGTGCCACGCTGCAGGGGCCAGGCAGCCACAGGCATCGTTTGGGCCCCGAGCTGGCCAGGCTGGAGTCAGGGCCCACTAAGCCGCAG
CircID chr18:79578068|79578214
ORF Type ORF5
Protein Length 45
Nucleotide Length 135
Protein Sequence MPGCSWTPGLLPMHLSSVPRCRGQAATGIVWAPSWPGWSQGPLSR
Nucleotide Sequence TTGCCTGGGTGCTCATGGACACCAGGTCTGCTCCCCATGCACTTGTCGTCTGTGCCACGCTGCAGGGGCCAGGCAGCCACAGGCATCGTTTGGGCCCCGAGCTGGCCAGGCTGGAGTCAGGGCCCACTAAGCCGC
CircID chr18:79578068|79578214
ORF Type ORF6
Protein Length 41
Nucleotide Length 126
Protein Sequence MGAHGHQVCSPCTCRLCHAAGARQPQASFGPRAGQAGVRAH
Nucleotide Sequence CTGGGTGCTCATGGACACCAGGTCTGCTCCCCATGCACTTGTCGTCTGTGCCACGCTGCAGGGGCCAGGCAGCCACAGGCATCGTTTGGGCCCCGAGCTGGCCAGGCTGGAGTCAGGGCCCACTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab