CircRNA Information

General Information
circRNA Basic Information
CircID chr18:79973283|79973420
Strand -
CircType exon
Host Gene ENSG00000141759.13;
Algorism CIRI2;
Sequence ACCCTGATCTCAGACCCCCGCCTGCAAAGCTGTGAGAGCACACATCTCTGTTAAAGCCCAGCTCGCGGCATATGCTGTCACCGCAGCCCCAGCAAACCAACCCAGTATGCAAAACGCACAGGCTCACAGGATAAACAC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr18:79973283|79973420 hsa-miR-210-5p 0 0 1
chr18:79973283|79973420 hsa-miR-210-3p 0 0 1
chr18:79973283|79973420 hsa-miR-448 0 0 1
chr18:79973283|79973420 hsa-miR-507 0 0 1
chr18:79973283|79973420 hsa-miR-557 0 0 1
chr18:79973283|79973420 hsa-miR-604 0 0 1
chr18:79973283|79973420 hsa-miR-576-3p 0 0 1
chr18:79973283|79973420 hsa-miR-342-3p 0 0 1
chr18:79973283|79973420 hsa-miR-542-3p 0 0 1
chr18:79973283|79973420 hsa-miR-450b-5p 0 0 1
chr18:79973283|79973420 hsa-miR-153 0 0 1
chr18:79973283|79973420 hsa-miR-663 0 0 1
chr18:79973283|79973420 hsa-miR-608 1 0 0
chr18:79973283|79973420 hsa-miR-663a 1 0 0
chr18:79973283|79973420 hsa-miR-762 1 0 0
chr18:79973283|79973420 hsa-miR-1295a 1 0 0
chr18:79973283|79973420 hsa-miR-3141 1 0 0
chr18:79973283|79973420 hsa-miR-3147 1 0 0
chr18:79973283|79973420 hsa-miR-3665 1 0 0
chr18:79973283|79973420 hsa-miR-3937 1 0 0
chr18:79973283|79973420 hsa-miR-1268b 1 0 0
chr18:79973283|79973420 hsa-miR-378g 0 1 0
chr18:79973283|79973420 hsa-miR-4443 1 0 0
chr18:79973283|79973420 hsa-miR-4467 1 0 0
chr18:79973283|79973420 hsa-miR-4498 1 0 0
chr18:79973283|79973420 hsa-miR-4505 1 0 0
chr18:79973283|79973420 hsa-miR-4507 1 1 0
chr18:79973283|79973420 hsa-miR-1587 1 0 0
chr18:79973283|79973420 hsa-miR-4674 1 0 0
chr18:79973283|79973420 hsa-miR-4734 1 0 0
chr18:79973283|79973420 hsa-miR-5787 1 0 0
chr18:79973283|79973420 hsa-miR-12114 1 0 0
chr18:79973283|79973420 hsa-miR-12121 1 0 0
chr18:79973283|79973420 hsa-miR-6861-5p 1 0 0
chr18:79973283|79973420 hsa-miR-3934-5p 1 0 0
chr18:79973283|79973420 hsa-miR-4722-5p 1 0 0
chr18:79973283|79973420 hsa-miR-6721-5p 1 0 0
chr18:79973283|79973420 hsa-miR-5589-5p 1 0 0
chr18:79973283|79973420 hsa-miR-6829-5p 0 1 0
chr18:79973283|79973420 hsa-miR-6786-5p 1 0 0
chr18:79973283|79973420 hsa-miR-1229-5p 1 0 0
chr18:79973283|79973420 hsa-miR-193b-5p 1 0 0
chr18:79973283|79973420 hsa-miR-1908-5p 1 1 0
chr18:79973283|79973420 hsa-miR-296-3p 1 0 0
chr18:79973283|79973420 hsa-miR-4690-5p 1 0 0
chr18:79973283|79973420 hsa-miR-6823-5p 1 0 0
chr18:79973283|79973420 hsa-miR-4756-3p 0 1 0
chr18:79973283|79973420 hsa-miR-6749-5p 1 0 0
chr18:79973283|79973420 hsa-miR-937-5p 1 0 0
chr18:79973283|79973420 hsa-miR-6811-3p 0 1 0
chr18:79973283|79973420 hsa-miR-4750-5p 1 0 0
chr18:79973283|79973420 hsa-miR-6869-3p 1 0 0
chr18:79973283|79973420 hsa-miR-2277-5p 1 0 0
chr18:79973283|79973420 hsa-miR-10400-5p 1 0 0
chr18:79973283|79973420 hsa-miR-4763-3p 1 0 0
chr18:79973283|79973420 hsa-miR-6787-5p 1 1 0
chr18:79973283|79973420 hsa-miR-6816-5p 1 0 0
chr18:79973283|79973420 hsa-miR-5001-5p 1 0 0
chr18:79973283|79973420 hsa-miR-6726-5p 1 0 0
chr18:79973283|79973420 hsa-miR-6803-5p 1 0 0
chr18:79973283|79973420 hsa-miR-3620-5p 1 0 0
chr18:79973283|79973420 hsa-miR-10396b-5p 1 1 0
chr18:79973283|79973420 hsa-miR-1237-5p 1 0 0
chr18:79973283|79973420 hsa-miR-4649-5p 1 0 0
chr18:79973283|79973420 hsa-miR-6729-5p 1 0 0
chr18:79973283|79973420 hsa-miR-6511b-5p 1 1 0
chr18:79973283|79973420 hsa-miR-3940-5p 1 1 0
chr18:79973283|79973420 hsa-miR-6855-5p 1 0 0
chr18:79973283|79973420 hsa-miR-10400-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr18:79973283|79973420
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MLKPSSRHMLSPQPQQTNPVCKTHRLTG
Nucleotide Sequence CTGTTAAAGCCCAGCTCGCGGCATATGCTGTCACCGCAGCCCCAGCAAACCAACCCAGTATGCAAAACGCACAGGCTCACAGGATAA
CircID chr18:79973283|79973420
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MGWFAGAAVTAYAASWALTEMCALTALQAGV
Nucleotide Sequence CTGGGTTGGTTTGCTGGGGCTGCGGTGACAGCATATGCCGCGAGCTGGGCTTTAACAGAGATGTGTGCTCTCACAGCTTTGCAGGCGGGGGTCTGA
CircID chr18:79973283|79973420
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MCVLHTGLVCWGCGDSICRELGFNRDVCSHSFAGGGLRSG
Nucleotide Sequence CTGTGCGTTTTGCATACTGGGTTGGTTTGCTGGGGCTGCGGTGACAGCATATGCCGCGAGCTGGGCTTTAACAGAGATGTGTGCTCTCACAGCTTTGCAGGCGGGGGTCTGAGATCAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab