CircRNA Information

General Information
circRNA Basic Information
CircID chr18:80163173|80163399
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTCCCGGGCCAAGCCTCACTGTACTCTGCCCGTGTGTGGGACAGGCGGCCAGGCTGTTTCACACATGGACACACACCATTTCTTACTCCCCTACCCTCAGCATCTCAGGCCTCACCTGCCCTGCATAAAACCTTAGTCTCTTCTCCTGGGCCCTGCTGCTCGTGGCTCTGAGCACAGGGCCTGAGCATAGGGCCTGTCCTCAAGGAGGAGCATGTGGATGGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr18:80163173|80163399 hsa-miR-15a-5p 0 0 1
chr18:80163173|80163399 hsa-miR-15a-3p 0 0 1
chr18:80163173|80163399 hsa-miR-214-5p 0 0 1
chr18:80163173|80163399 hsa-miR-214-3p 0 0 1
chr18:80163173|80163399 hsa-miR-15b-5p 0 0 1
chr18:80163173|80163399 hsa-miR-15b-3p 0 0 1
chr18:80163173|80163399 hsa-miR-143-5p 0 0 1
chr18:80163173|80163399 hsa-miR-143-3p 0 0 1
chr18:80163173|80163399 hsa-miR-195-5p 0 0 1
chr18:80163173|80163399 hsa-miR-195-3p 0 0 1
chr18:80163173|80163399 hsa-miR-328-5p 0 0 1
chr18:80163173|80163399 hsa-miR-328-3p 0 0 1
chr18:80163173|80163399 hsa-miR-424-5p 0 0 1
chr18:80163173|80163399 hsa-miR-424-3p 0 0 1
chr18:80163173|80163399 hsa-miR-494-5p 0 0 1
chr18:80163173|80163399 hsa-miR-494-3p 0 0 1
chr18:80163173|80163399 hsa-miR-497-5p 0 0 1
chr18:80163173|80163399 hsa-miR-497-3p 0 0 1
chr18:80163173|80163399 hsa-miR-522-5p 0 0 1
chr18:80163173|80163399 hsa-miR-522-3p 0 0 1
chr18:80163173|80163399 hsa-miR-602 0 1 1
chr18:80163173|80163399 hsa-miR-665 0 1 1
chr18:80163173|80163399 hsa-miR-1291 0 1 1
chr18:80163173|80163399 hsa-miR-1253 0 0 1
chr18:80163173|80163399 hsa-miR-125a-3p 1 1 1
chr18:80163173|80163399 hsa-miR-1224-5p 0 0 1
chr18:80163173|80163399 hsa-miR-485-5p 0 0 1
chr18:80163173|80163399 hsa-miR-146b-3p 0 1 1
chr18:80163173|80163399 hsa-miR-188-3p 0 1 1
chr18:80163173|80163399 hsa-miR-491-3p 0 0 1
chr18:80163173|80163399 hsa-miR-16 0 0 1
chr18:80163173|80163399 hsa-miR-658 1 0 0
chr18:80163173|80163399 hsa-miR-765 1 0 0
chr18:80163173|80163399 hsa-miR-1248 0 1 0
chr18:80163173|80163399 hsa-miR-1275 1 0 0
chr18:80163173|80163399 hsa-miR-2278 1 0 0
chr18:80163173|80163399 hsa-miR-2861 1 0 0
chr18:80163173|80163399 hsa-miR-3141 1 0 0
chr18:80163173|80163399 hsa-miR-3147 1 0 0
chr18:80163173|80163399 hsa-miR-3188 1 1 0
chr18:80163173|80163399 hsa-miR-4316 0 1 0
chr18:80163173|80163399 hsa-miR-4268 0 1 0
chr18:80163173|80163399 hsa-miR-4271 1 0 0
chr18:80163173|80163399 hsa-miR-3652 1 0 0
chr18:80163173|80163399 hsa-miR-3918 0 1 0
chr18:80163173|80163399 hsa-miR-2392 1 0 0
chr18:80163173|80163399 hsa-miR-4510 1 0 0
chr18:80163173|80163399 hsa-miR-4516 1 0 0
chr18:80163173|80163399 hsa-miR-4656 1 0 0
chr18:80163173|80163399 hsa-miR-4663 1 0 0
chr18:80163173|80163399 hsa-miR-4688 1 0 0
chr18:80163173|80163399 hsa-miR-4689 1 0 0
chr18:80163173|80163399 hsa-miR-4706 1 0 0
chr18:80163173|80163399 hsa-miR-4710 1 1 0
chr18:80163173|80163399 hsa-miR-4736 0 1 0
chr18:80163173|80163399 hsa-miR-5090 1 0 0
chr18:80163173|80163399 hsa-miR-5698 1 0 0
chr18:80163173|80163399 hsa-miR-5787 1 0 0
chr18:80163173|80163399 hsa-miR-6088 1 0 0
chr18:80163173|80163399 hsa-miR-6127 1 0 0
chr18:80163173|80163399 hsa-miR-6129 1 0 0
chr18:80163173|80163399 hsa-miR-6132 1 1 0
chr18:80163173|80163399 hsa-miR-6133 1 0 0
chr18:80163173|80163399 hsa-miR-6860 1 0 0
chr18:80163173|80163399 hsa-miR-9718 1 0 0
chr18:80163173|80163399 hsa-miR-12119 1 0 0
chr18:80163173|80163399 hsa-miR-12121 1 0 0
chr18:80163173|80163399 hsa-miR-150-3p 1 0 0
chr18:80163173|80163399 hsa-miR-6734-5p 1 0 0
chr18:80163173|80163399 hsa-miR-4731-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6840-3p 1 0 0
chr18:80163173|80163399 hsa-miR-6765-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6861-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6825-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6510-5p 0 1 0
chr18:80163173|80163399 hsa-miR-7851-3p 1 0 0
chr18:80163173|80163399 hsa-miR-6089 1 0 0
chr18:80163173|80163399 hsa-miR-6880-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6746-5p 1 0 0
chr18:80163173|80163399 hsa-miR-7160-5p 1 1 0
chr18:80163173|80163399 hsa-miR-6727-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6721-5p 1 0 0
chr18:80163173|80163399 hsa-miR-197-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6783-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6871-5p 1 0 0
chr18:80163173|80163399 hsa-miR-3180-3p 1 0 0
chr18:80163173|80163399 hsa-miR-6748-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6772-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6829-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6881-5p 1 0 0
chr18:80163173|80163399 hsa-miR-2467-3p 1 0 0
chr18:80163173|80163399 hsa-miR-6786-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6835-5p 1 0 0
chr18:80163173|80163399 hsa-miR-5088-5p 1 0 0
chr18:80163173|80163399 hsa-miR-1229-5p 1 0 0
chr18:80163173|80163399 hsa-miR-296-3p 1 0 0
chr18:80163173|80163399 hsa-miR-6823-5p 1 0 0
chr18:80163173|80163399 hsa-miR-4732-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6749-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6847-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6834-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6824-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6789-5p 1 0 0
chr18:80163173|80163399 hsa-miR-194-3p 1 0 0
chr18:80163173|80163399 hsa-miR-7112-5p 1 1 0
chr18:80163173|80163399 hsa-miR-6818-5p 0 1 0
chr18:80163173|80163399 hsa-miR-4529-5p 0 1 0
chr18:80163173|80163399 hsa-miR-1914-5p 0 1 0
chr18:80163173|80163399 hsa-miR-1296-3p 1 0 0
chr18:80163173|80163399 hsa-miR-5004-5p 0 1 0
chr18:80163173|80163399 hsa-miR-5197-3p 0 1 0
chr18:80163173|80163399 hsa-miR-6767-3p 0 1 0
chr18:80163173|80163399 hsa-miR-3664-3p 0 1 0
chr18:80163173|80163399 hsa-miR-4485-5p 0 1 0
chr18:80163173|80163399 hsa-miR-1207-5p 1 0 0
chr18:80163173|80163399 hsa-miR-4763-3p 1 0 0
chr18:80163173|80163399 hsa-miR-6769b-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6787-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6870-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6775-5p 1 0 0
chr18:80163173|80163399 hsa-miR-1343-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6743-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6752-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6754-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6756-5p 1 1 0
chr18:80163173|80163399 hsa-miR-6803-5p 1 1 0
chr18:80163173|80163399 hsa-miR-7110-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6722-3p 1 0 0
chr18:80163173|80163399 hsa-miR-6751-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6763-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6808-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6879-5p 1 1 0
chr18:80163173|80163399 hsa-miR-7111-5p 1 0 0
chr18:80163173|80163399 hsa-miR-4728-5p 1 0 0
chr18:80163173|80163399 hsa-miR-5196-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6780b-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6836-5p 1 1 0
chr18:80163173|80163399 hsa-miR-4632-5p 1 1 0
chr18:80163173|80163399 hsa-miR-4745-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6729-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6735-5p 1 1 0
chr18:80163173|80163399 hsa-miR-6777-5p 1 1 0
chr18:80163173|80163399 hsa-miR-6846-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6848-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6889-5p 1 0 0
chr18:80163173|80163399 hsa-miR-3187-5p 1 0 0
chr18:80163173|80163399 hsa-miR-4436b-3p 1 1 0
chr18:80163173|80163399 hsa-miR-4723-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6831-5p 1 0 0
chr18:80163173|80163399 hsa-miR-939-5p 1 0 0
chr18:80163173|80163399 hsa-miR-1266-5p 0 1 0
chr18:80163173|80163399 hsa-miR-6511b-5p 1 0 0
chr18:80163173|80163399 hsa-miR-5008-3p 0 1 0
chr18:80163173|80163399 hsa-miR-6773-5p 1 1 0
chr18:80163173|80163399 hsa-miR-7843-5p 1 0 0
chr18:80163173|80163399 hsa-miR-4665-5p 1 0 0
chr18:80163173|80163399 hsa-miR-4472 1 0 0
chr18:80163173|80163399 hsa-miR-550a-3-5p 1 0 0
chr18:80163173|80163399 hsa-miR-550a-5p 1 0 0
chr18:80163173|80163399 hsa-miR-6775-3p 0 1 0
chr18:80163173|80163399 hsa-miR-6838-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr18:80163173|80163399
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MPVCGTGGQAVSHMDTHHFLLPYPQHLRPHLPCIKP
Nucleotide Sequence CTGCCCGTGTGTGGGACAGGCGGCCAGGCTGTTTCACACATGGACACACACCATTTCTTACTCCCCTACCCTCAGCATCTCAGGCCTCACCTGCCCTGCATAAAACCTTAG
CircID chr18:80163173|80163399
ORF Type ORF2
Protein Length 50
Nucleotide Length 153
Protein Sequence MYSARVWDRRPGCFTHGHTPFLTPLPSASQASPALHKTLVSSPGPCCSWL
Nucleotide Sequence CTGTACTCTGCCCGTGTGTGGGACAGGCGGCCAGGCTGTTTCACACATGGACACACACCATTTCTTACTCCCCTACCCTCAGCATCTCAGGCCTCACCTGCCCTGCATAAAACCTTAGTCTCTTCTCCTGGGCCCTGCTGCTCGTGGCTCTGA
CircID chr18:80163173|80163399
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MLLLEDRPYAQALCSEPRAAGPRRRD
Nucleotide Sequence ATGCTCCTCCTTGAGGACAGGCCCTATGCTCAGGCCCTGTGCTCAGAGCCACGAGCAGCAGGGCCCAGGAGAAGAGACTAA
CircID chr18:80163173|80163399
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MRTGPMLRPCAQSHEQQGPGEETKVLCRAGEA
Nucleotide Sequence TTGAGGACAGGCCCTATGCTCAGGCCCTGTGCTCAGAGCCACGAGCAGCAGGGCCCAGGAGAAGAGACTAAGGTTTTATGCAGGGCAGGTGAGGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab