CircRNA Information

General Information
circRNA Basic Information
CircID chr18:9758987|9759112
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTCCTCATGTCTGAACGTCTATTCCCAAGGCAGCCCTGGGTCCAAACCCTGGGAAGGACAAAGCTACTACTGCTTCTCCATCTCAAAGCCGCACACTGCTTGATCTCAAAGATTATCAATTCTGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr18:9758987|9759112 hsa-miR-143-5p 0 0 1
chr18:9758987|9759112 hsa-miR-143-3p 0 0 1
chr18:9758987|9759112 hsa-miR-648 0 0 1
chr18:9758987|9759112 hsa-miR-147b-5p 0 0 1
chr18:9758987|9759112 hsa-miR-147b-3p 0 0 1
chr18:9758987|9759112 hsa-miR-1324 0 0 1
chr18:9758987|9759112 hsa-miR-199b-3p 0 0 1
chr18:9758987|9759112 hsa-miR-199a-3p 0 0 1
chr18:9758987|9759112 hsa-miR-298 1 0 0
chr18:9758987|9759112 hsa-miR-2278 1 0 0
chr18:9758987|9759112 hsa-miR-711 1 1 0
chr18:9758987|9759112 hsa-miR-4292 1 0 0
chr18:9758987|9759112 hsa-miR-3911 1 0 0
chr18:9758987|9759112 hsa-miR-4434 0 1 0
chr18:9758987|9759112 hsa-miR-4449 1 0 0
chr18:9758987|9759112 hsa-miR-4519 1 0 0
chr18:9758987|9759112 hsa-miR-4534 0 1 0
chr18:9758987|9759112 hsa-miR-4669 1 0 0
chr18:9758987|9759112 hsa-miR-4692 1 1 0
chr18:9758987|9759112 hsa-miR-4739 1 0 0
chr18:9758987|9759112 hsa-miR-4741 1 0 0
chr18:9758987|9759112 hsa-miR-6088 1 0 0
chr18:9758987|9759112 hsa-miR-8085 1 0 0
chr18:9758987|9759112 hsa-miR-6857-5p 1 0 0
chr18:9758987|9759112 hsa-miR-6728-5p 1 1 0
chr18:9758987|9759112 hsa-miR-6757-5p 1 0 0
chr18:9758987|9759112 hsa-miR-6716-5p 1 0 0
chr18:9758987|9759112 hsa-miR-1292-5p 1 0 0
chr18:9758987|9759112 hsa-miR-6772-5p 1 0 0
chr18:9758987|9759112 hsa-miR-6829-5p 1 1 0
chr18:9758987|9759112 hsa-miR-6810-5p 1 0 0
chr18:9758987|9759112 hsa-miR-5088-5p 1 0 0
chr18:9758987|9759112 hsa-miR-1226-5p 1 0 0
chr18:9758987|9759112 hsa-miR-6740-5p 1 0 0
chr18:9758987|9759112 hsa-miR-193b-5p 1 0 0
chr18:9758987|9759112 hsa-miR-6784-5p 1 0 0
chr18:9758987|9759112 hsa-miR-30c-2-3p 1 0 0
chr18:9758987|9759112 hsa-miR-7161-3p 1 0 0
chr18:9758987|9759112 hsa-miR-6823-5p 0 1 0
chr18:9758987|9759112 hsa-miR-4713-3p 1 0 0
chr18:9758987|9759112 hsa-miR-3162-5p 1 0 0
chr18:9758987|9759112 hsa-miR-7850-5p 0 1 0
chr18:9758987|9759112 hsa-miR-7162-3p 1 0 0
chr18:9758987|9759112 hsa-miR-6499-3p 0 1 0
chr18:9758987|9759112 hsa-miR-2355-3p 0 1 0
chr18:9758987|9759112 hsa-miR-5001-5p 1 0 0
chr18:9758987|9759112 hsa-miR-6851-5p 1 0 0
chr18:9758987|9759112 hsa-miR-1249-5p 1 0 0
chr18:9758987|9759112 hsa-miR-449c-5p 1 0 0
chr18:9758987|9759112 hsa-miR-4685-5p 0 1 0
chr18:9758987|9759112 hsa-miR-6858-5p 1 0 0
chr18:9758987|9759112 hsa-miR-4769-5p 1 0 0
chr18:9758987|9759112 hsa-miR-6724-5p 1 1 0
chr18:9758987|9759112 hsa-miR-5009-5p 1 0 0
chr18:9758987|9759112 hsa-miR-6837-5p 1 1 0
chr18:9758987|9759112 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr18:9758987|9759112
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MGPNPGKDKATTASPSQSRTLLDLKDYQFC
Nucleotide Sequence CTGGGTCCAAACCCTGGGAAGGACAAAGCTACTACTGCTTCTCCATCTCAAAGCCGCACACTGCTTGATCTCAAAGATTATCAATTCTGT
CircID chr18:9758987|9759112
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MSERLFPRQPWVQTLGRTKLLLLLHLKAAHCLISKIINS
Nucleotide Sequence ATGTCTGAACGTCTATTCCCAAGGCAGCCCTGGGTCCAAACCCTGGGAAGGACAAAGCTACTACTGCTTCTCCATCTCAAAGCCGCACACTGCTTGATCTCAAAGATTATCAATTCT
CircID chr18:9758987|9759112
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MNVYSQGSPGSKPWEGQSYYCFSISKPHTA
Nucleotide Sequence CTGAACGTCTATTCCCAAGGCAGCCCTGGGTCCAAACCCTGGGAAGGACAAAGCTACTACTGCTTCTCCATCTCAAAGCCGCACACTGCTTGA
CircID chr18:9758987|9759112
ORF Type ORF4
Protein Length 40
Nucleotide Length 120
Protein Sequence MIIFEIKQCAALRWRSSSSFVLPRVWTQGCLGNRRSDMRK
Nucleotide Sequence TTGATAATCTTTGAGATCAAGCAGTGTGCGGCTTTGAGATGGAGAAGCAGTAGTAGCTTTGTCCTTCCCAGGGTTTGGACCCAGGGCTGCCTTGGGAATAGACGTTCAGACATGAGGAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab