CircRNA Information

General Information
circRNA Basic Information
CircID chr19:10139784|10140155
Strand +
CircType exon
Host Gene ENSG00000130816.13;
Algorism CIRI2;
Sequence GTGGAGATGCTGTGCGGCGGGCCGCCCTGCCAGGGCTTCAGCGGCATGAACCGCTTCAATTCGCGCACCTACTCCAAGTTCAAAAACTCTCTGGTGGTTTCCTTCCTCAGGTAAACGGGTAGAAGCCCCCCAGTGTTGCCAGACGGCCCGGGGCTGTGCCGCATGTCAGCAGTGGTCATTTTCGCCCTGCACTGAGGCCTCTGCCCCCCGGAAGCTCACAGCTCAGCTCTCACCAGGGAGAGACTTTGATAACATTCGTGAGGGGCTTCCGGCACAGTGGGTCGTTTCTTCCCTCTGTCTGTGGAGGTGACTCCTGCAGTCTCTCCTGCCCCCTACAGCTACTGCGACTACTACCGGCCCCGGTTCTTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:10139784|10140155 hsa-miR-99a-5p 0 0 1
chr19:10139784|10140155 hsa-miR-99a-3p 0 0 1
chr19:10139784|10140155 hsa-miR-100-5p 0 0 1
chr19:10139784|10140155 hsa-miR-100-3p 0 0 1
chr19:10139784|10140155 hsa-miR-148a-5p 0 0 1
chr19:10139784|10140155 hsa-miR-148a-3p 0 0 1
chr19:10139784|10140155 hsa-miR-141-5p 0 0 1
chr19:10139784|10140155 hsa-miR-141-3p 0 0 1
chr19:10139784|10140155 hsa-miR-152-5p 0 0 1
chr19:10139784|10140155 hsa-miR-152-3p 0 0 1
chr19:10139784|10140155 hsa-miR-185-5p 0 0 1
chr19:10139784|10140155 hsa-miR-185-3p 0 0 1
chr19:10139784|10140155 hsa-miR-200a-5p 0 0 1
chr19:10139784|10140155 hsa-miR-200a-3p 0 0 1
chr19:10139784|10140155 hsa-miR-99b-5p 0 0 1
chr19:10139784|10140155 hsa-miR-99b-3p 0 0 1
chr19:10139784|10140155 hsa-miR-148b-5p 0 0 1
chr19:10139784|10140155 hsa-miR-148b-3p 0 0 1
chr19:10139784|10140155 hsa-miR-432-5p 0 0 1
chr19:10139784|10140155 hsa-miR-432-3p 0 0 1
chr19:10139784|10140155 hsa-miR-520g-5p 0 0 1
chr19:10139784|10140155 hsa-miR-520g-3p 0 0 1
chr19:10139784|10140155 hsa-miR-520h 0 0 1
chr19:10139784|10140155 hsa-miR-551a 0 0 1
chr19:10139784|10140155 hsa-miR-558 0 0 1
chr19:10139784|10140155 hsa-miR-551b-5p 0 0 1
chr19:10139784|10140155 hsa-miR-551b-3p 0 0 1
chr19:10139784|10140155 hsa-miR-637 0 0 1
chr19:10139784|10140155 hsa-miR-890 0 0 1
chr19:10139784|10140155 hsa-miR-1205 0 0 1
chr19:10139784|10140155 hsa-miR-1206 0 0 1
chr19:10139784|10140155 hsa-miR-1286 0 0 1
chr19:10139784|10140155 hsa-miR-1252-5p 0 0 1
chr19:10139784|10140155 hsa-miR-1252-3p 0 0 1
chr19:10139784|10140155 hsa-miR-1324 0 0 1
chr19:10139784|10140155 hsa-miR-127-5p 0 0 1
chr19:10139784|10140155 hsa-miR-671-5p 1 0 1
chr19:10139784|10140155 hsa-miR-486-3p 0 0 1
chr19:10139784|10140155 hsa-miR-1244 0 0 1
chr19:10139784|10140155 hsa-miR-628-5p 0 0 1
chr19:10139784|10140155 hsa-miR-1207-5p 1 0 1
chr19:10139784|10140155 hsa-miR-509-3-5p 0 0 1
chr19:10139784|10140155 hsa-miR-509-5p 0 0 1
chr19:10139784|10140155 hsa-miR-548b-3p 0 0 1
chr19:10139784|10140155 hsa-miR-663a 1 0 0
chr19:10139784|10140155 hsa-miR-762 1 0 0
chr19:10139784|10140155 hsa-miR-298 1 0 0
chr19:10139784|10140155 hsa-miR-936 1 0 0
chr19:10139784|10140155 hsa-miR-1183 1 0 0
chr19:10139784|10140155 hsa-miR-3185 1 0 0
chr19:10139784|10140155 hsa-miR-378c 1 0 0
chr19:10139784|10140155 hsa-miR-378e 1 0 0
chr19:10139784|10140155 hsa-miR-4498 1 0 0
chr19:10139784|10140155 hsa-miR-4508 1 0 0
chr19:10139784|10140155 hsa-miR-4533 1 0 0
chr19:10139784|10140155 hsa-miR-4651 1 0 0
chr19:10139784|10140155 hsa-miR-4656 1 0 0
chr19:10139784|10140155 hsa-miR-4706 1 0 0
chr19:10139784|10140155 hsa-miR-4739 1 0 0
chr19:10139784|10140155 hsa-miR-4741 1 0 0
chr19:10139784|10140155 hsa-miR-5090 1 0 0
chr19:10139784|10140155 hsa-miR-6077 1 0 0
chr19:10139784|10140155 hsa-miR-6085 1 0 0
chr19:10139784|10140155 hsa-miR-6132 0 1 0
chr19:10139784|10140155 hsa-miR-8073 0 1 0
chr19:10139784|10140155 hsa-miR-8089 1 0 0
chr19:10139784|10140155 hsa-miR-9500 0 1 0
chr19:10139784|10140155 hsa-miR-9718 0 1 0
chr19:10139784|10140155 hsa-miR-12122 0 1 0
chr19:10139784|10140155 hsa-miR-128-1-5p 0 1 0
chr19:10139784|10140155 hsa-miR-6765-5p 1 0 0
chr19:10139784|10140155 hsa-miR-4687-3p 1 0 0
chr19:10139784|10140155 hsa-miR-6510-5p 1 0 0
chr19:10139784|10140155 hsa-miR-766-5p 1 0 0
chr19:10139784|10140155 hsa-miR-1227-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6089 1 0 0
chr19:10139784|10140155 hsa-miR-6873-5p 0 1 0
chr19:10139784|10140155 hsa-miR-7160-5p 0 1 0
chr19:10139784|10140155 hsa-miR-6727-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6721-5p 1 1 0
chr19:10139784|10140155 hsa-miR-4655-5p 1 0 0
chr19:10139784|10140155 hsa-miR-3190-3p 1 0 0
chr19:10139784|10140155 hsa-miR-6805-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6798-5p 0 1 0
chr19:10139784|10140155 hsa-miR-3126-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6760-5p 1 0 0
chr19:10139784|10140155 hsa-miR-2467-3p 1 0 0
chr19:10139784|10140155 hsa-miR-6835-5p 1 0 0
chr19:10139784|10140155 hsa-miR-7109-5p 1 1 0
chr19:10139784|10140155 hsa-miR-6784-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6753-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6757-3p 0 1 0
chr19:10139784|10140155 hsa-miR-6749-5p 1 0 0
chr19:10139784|10140155 hsa-miR-4743-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6781-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6877-5p 1 0 0
chr19:10139784|10140155 hsa-miR-7112-5p 0 1 0
chr19:10139784|10140155 hsa-miR-6856-3p 0 1 0
chr19:10139784|10140155 hsa-miR-6755-3p 0 1 0
chr19:10139784|10140155 hsa-miR-5587-3p 0 1 0
chr19:10139784|10140155 hsa-miR-4763-3p 1 0 0
chr19:10139784|10140155 hsa-miR-6778-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6816-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6775-5p 1 0 0
chr19:10139784|10140155 hsa-miR-5001-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6726-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6743-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6813-5p 1 0 0
chr19:10139784|10140155 hsa-miR-1249-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6797-5p 0 1 0
chr19:10139784|10140155 hsa-miR-6879-5p 1 0 0
chr19:10139784|10140155 hsa-miR-3620-5p 1 0 0
chr19:10139784|10140155 hsa-miR-5196-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6836-5p 0 1 0
chr19:10139784|10140155 hsa-miR-1237-5p 1 0 0
chr19:10139784|10140155 hsa-miR-1909-3p 1 0 0
chr19:10139784|10140155 hsa-miR-328-5p 1 1 0
chr19:10139784|10140155 hsa-miR-6729-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6735-5p 0 1 0
chr19:10139784|10140155 hsa-miR-6846-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6848-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6858-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6885-5p 0 1 0
chr19:10139784|10140155 hsa-miR-939-5p 1 0 0
chr19:10139784|10140155 hsa-miR-4758-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6511a-5p 1 0 0
chr19:10139784|10140155 hsa-miR-10396a-3p 0 1 0
chr19:10139784|10140155 hsa-miR-10396b-3p 0 1 0
chr19:10139784|10140155 hsa-miR-6856-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6876-5p 0 1 0
chr19:10139784|10140155 hsa-miR-5591-5p 0 1 0
chr19:10139784|10140155 hsa-miR-550a-5p 1 0 0
chr19:10139784|10140155 hsa-miR-6762-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:10139784|10140155
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLR
Nucleotide Sequence ATGCTGTGCGGCGGGCCGCCCTGCCAGGGCTTCAGCGGCATGAACCGCTTCAATTCGCGCACCTACTCCAAGTTCAAAAACTCTCTGGTGGTTTCCTTCCTCAGGTAA
CircID chr19:10139784|10140155
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MSVEVTPAVSPAPYSYCDYYRPRFFL
Nucleotide Sequence CTGTCTGTGGAGGTGACTCCTGCAGTCTCTCCTGCCCCCTACAGCTACTGCGACTACTACCGGCCCCGGTTCTTCCTC
CircID chr19:10139784|10140155
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MPGLQRHEPLQFAHLLQVQKLSGGFLPQVNG
Nucleotide Sequence CTGCCAGGGCTTCAGCGGCATGAACCGCTTCAATTCGCGCACCTACTCCAAGTTCAAAAACTCTCTGGTGGTTTCCTTCCTCAGGTAAACGGGTAG
CircID chr19:10139784|10140155
ORF Type ORF4
Protein Length 60
Nucleotide Length 180
Protein Sequence MRPLPPGSSQLSSHQGETLITFVRGFRHSGSFLPSVCGGDSCSLSCPLQLLRLLPAPVLP
Nucleotide Sequence CTGAGGCCTCTGCCCCCCGGAAGCTCACAGCTCAGCTCTCACCAGGGAGAGACTTTGATAACATTCGTGAGGGGCTTCCGGCACAGTGGGTCGTTTCTTCCCTCTGTCTGTGGAGGTGACTCCTGCAGTCTCTCCTGCCCCCTACAGCTACTGCGACTACTACCGGCCCCGGTTCTTCCT
CircID chr19:10139784|10140155
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MTTADMRHSPGPSGNTGGLLPVYLRKETTREFLNLE
Nucleotide Sequence ATGACCACTGCTGACATGCGGCACAGCCCCGGGCCGTCTGGCAACACTGGGGGGCTTCTACCCGTTTACCTGAGGAAGGAAACCACCAGAGAGTTTTTGAACTTGGAGTAG
CircID chr19:10139784|10140155
ORF Type ORF6
Protein Length 29
Nucleotide Length 90
Protein Sequence MQESPPQTEGRNDPLCRKPLTNVIKVSPW
Nucleotide Sequence CTGCAGGAGTCACCTCCACAGACAGAGGGAAGAAACGACCCACTGTGCCGGAAGCCCCTCACGAATGTTATCAAAGTCTCTCCCTGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab